Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_031030.1
Length=170788
Score E
Sequences producing significant alignments: (Bits) Value
seq81708 140 4e-28
seq85787 100 3e-16
seq1416 82.4 8e-11
>seq81708
Length=1085
Score = 140 bits (154), Expect = 4e-28
Identities = 116/142 (82%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 60704 TGCCATTACAAACTCTTGGTGAATGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTC 60763
||| |||||| || | ||| |||||||||| ||||| || |||||||| || || |||
Sbjct 233 TGCAATTACAGGCTTTCGGTAAATGTACGAGTAATAACATCACGCTGCTGCTCTGGCGTC 292
Query 60764 AGAGAGTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCC 60823
|| | ||||||||| || ||||| ||||| || || ||||||| ||| ||||||||||||
Sbjct 293 AGCGCGTTAAAGCGCACGGCATAGCCGGAAACGCGAATGGTCAACTGTGGATATTTTTCC 352
Query 60824 GGATGCTTAACTGCATCTTCCA 60845
||||| || || ||||||||||
Sbjct 353 GGATGGTTCACGGCATCTTCCA 374
>seq85787
Length=1013
Score = 100 bits (110), Expect = 3e-16
Identities = 97/125 (78%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 60704 TGCCATTACAAACTCTTGGTGAATGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTC 60763
||| ||||||| || |||||| ||||| | || || || |||||| || |||
Sbjct 584 TGCGATTACAACGACTGGGTGAAAGTACGTGTAATTACATCTTTCTGCTGCTCTTTAGTG 643
Query 60764 AGAGAGTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCC 60823
|| ||||| ||||| || ||||| || || || ||||||||||||||||||||||| |||
Sbjct 644 AGCGAGTTGAAGCGTACAGCATAGCCAGAAACGCGGATGGTCAGCTGCGGATATTTCTCC 703
Query 60824 GGATG 60828
|||||
Sbjct 704 GGATG 708
>seq1416
Length=128702
Score = 82.4 bits (90), Expect = 8e-11
Identities = 51/55 (93%), Gaps = 0/55 (0%)
Strand=Plus/Minus
Query 68831 GGATTCGAACCATGGACCAATTGATTAACAGTCAACTGCTCTACCACTGAGCTAC 68885
|||||||||||| ||||||||| ||||||| |||||||||||||||||||||||
Sbjct 95311 GGATTCGAACCAGCGACCAATTGGTTAACAGCCAACTGCTCTACCACTGAGCTAC 95257
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 545801650833600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |