Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_031030.1 Length=170788 Score E Sequences producing significant alignments: (Bits) Value seq81708 140 4e-28 seq85787 100 3e-16 seq1416 82.4 8e-11 >seq81708 Length=1085 Score = 140 bits (154), Expect = 4e-28 Identities = 116/142 (82%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 60704 TGCCATTACAAACTCTTGGTGAATGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTC 60763 ||| |||||| || | ||| |||||||||| ||||| || |||||||| || || ||| Sbjct 233 TGCAATTACAGGCTTTCGGTAAATGTACGAGTAATAACATCACGCTGCTGCTCTGGCGTC 292 Query 60764 AGAGAGTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCC 60823 || | ||||||||| || ||||| ||||| || || ||||||| ||| |||||||||||| Sbjct 293 AGCGCGTTAAAGCGCACGGCATAGCCGGAAACGCGAATGGTCAACTGTGGATATTTTTCC 352 Query 60824 GGATGCTTAACTGCATCTTCCA 60845 ||||| || || |||||||||| Sbjct 353 GGATGGTTCACGGCATCTTCCA 374 >seq85787 Length=1013 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 60704 TGCCATTACAAACTCTTGGTGAATGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTC 60763 ||| ||||||| || |||||| ||||| | || || || |||||| || ||| Sbjct 584 TGCGATTACAACGACTGGGTGAAAGTACGTGTAATTACATCTTTCTGCTGCTCTTTAGTG 643 Query 60764 AGAGAGTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCC 60823 || ||||| ||||| || ||||| || || || ||||||||||||||||||||||| ||| Sbjct 644 AGCGAGTTGAAGCGTACAGCATAGCCAGAAACGCGGATGGTCAGCTGCGGATATTTCTCC 703 Query 60824 GGATG 60828 ||||| Sbjct 704 GGATG 708 >seq1416 Length=128702 Score = 82.4 bits (90), Expect = 8e-11 Identities = 51/55 (93%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 68831 GGATTCGAACCATGGACCAATTGATTAACAGTCAACTGCTCTACCACTGAGCTAC 68885 |||||||||||| ||||||||| ||||||| ||||||||||||||||||||||| Sbjct 95311 GGATTCGAACCAGCGACCAATTGGTTAACAGCCAACTGCTCTACCACTGAGCTAC 95257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545801650833600