Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq13731 576 2e-159 seq22 242 5e-59 seq59797 122 1e-22 >seq13731 Length=15303 Score = 576 bits (638), Expect = 2e-159 Identities = 1272/1888 (67%), Gaps = 38/1888 (2%) Strand=Plus/Plus Query 76771 TCTTATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATAC 76830 |||| |||| ||||| || || | | | || ||||| ||||||| |||||||| | Sbjct 558 TCTTGTCCACAGTAAATTGTATAGCATTTGCAGCAGGTTTGGTACGTAAGTAGTACATTC 617 Query 76831 CAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAG 76890 | |||||||||||| |||| || |||||||| || || |||||| ||| | | Sbjct 618 CTGTTTTTAGACCCGCTTTCCAGCCATAGAAATGTATAGAAGTTAGTTTGCCATAGTTTG 677 Query 76891 GATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCG 76950 | || || | ||| || || | ||| || ||||| |||||||| ||||| | ||| || | Sbjct 678 GCTCTGCGACATGTATGTTAAACGATTGGCTTTGGTCGATGAATGCTCCCCGATCTGCTG 737 Query 76951 CCATTTTTATAATGGTCTTTTGAG-GA-ATTTCCCAAATAGTTTTGAAAACTTGTTTGAT 77008 ||||||| || || |||| | || |||||||| | ||||||| | | | || Sbjct 738 CCATTTTAAT--TGAAGTTTTAACCGAGATTTCCCATACAGTTTTGTACAGATCGCGAAT 795 Query 77009 ATCATCTGGAA-GGTTTGTATT--TTGAATGGAACCACCATCTGATATAATTGTATTCTT 77065 | | || | || || ||| ||| ||||| |||| | |||||| |||| || Sbjct 796 GTGCTGCGGTATGGATTCTATGCCTTGTATGGAGCCACGGCTAGTAATAATTTTATTTTT 855 Query 77066 TATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACTAT 77125 || ||||||| |||||| | ||| || | | | | || | |||| |||| || | Sbjct 856 CATGTCATCATCCCACAAACCCAACTCAGTGAGATCGCGCAGCAAATGATGATTTACAAC 915 Query 77126 TTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGA 77185 ||||||||| ||||| | ||| | ||| ||||| || ||| || || ||||| | || Sbjct 916 TTGAAATTCGCCAGAGAGTACGCGACGTGTGTAGATGTTAGAAGTGTAGGGTTCGAATGA 975 Query 77186 TTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACT 77245 ||||| || |||| ||||| ||||| ||||| || ||||||||||| | || | Sbjct 976 CTCATTATTGCCCATGATTTGCGCAGTTGAAGCGGTGGGCATAGGTGCAAGCAGGAGGGA 1035 Query 77246 ATTTCTGAGACCATG-TGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTG 77304 ||| || | |||||| |||| | ||||| || || | | | |||| | ||| || || | Sbjct 1036 ATTCCTAACACCATGCTGTT-TAATTTTCTCCTTCAATTCTGTCCAGTTCCAGAGCTCAG 1094 Query 77305 AAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCATTAT 77364 || |||||| | || |||||||||||||| || ||| | | || | || Sbjct 1095 TGGGCTTCTTATCCCACATGTCATATTGTAGAATTCCCTTGCTAACTGGACAGCCTTCAT 1154 Query 77365 ATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTAAT 77424 | |||||||| | || | | | ||||| | ||||||||| ||||| ||||| || |||| Sbjct 1155 AAGTTTCATAGGTACCGTATTTCTCAGCCAATTCACAACTAGCTTCTAATGCACCATAAT 1214 Query 77425 AAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGATAAT 77484 |||| |||||||||| || | ||| | | ||||| || || ||||||| Sbjct 1215 AAATGGTTTCGAAAACCTGTTGATTTAAAAGGAATGCTTGTTCGCTTTCGTACGGATAGC 1274 Query 77485 GTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCTCT 77544 | | ||| |||| || ||||| || || || || || || || || || | ||||| Sbjct 1275 GCATAAGTATAAGAGCGTCTGCAAAACCTTGTACGCCGATCCCGATTGGACGGTGTCTAA 1334 Query 77545 TATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAGAT 77604 || || |||| || || || | || || | ||| || || || |||||||| | || Sbjct 1335 AGTTTGATTTTTTTGCCTCGGGCAATGGGTAGTGATTTATTTCAATGATTTTATTCAAAT 1394 Query 77605 TTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAA---TCTTCCATCTA 77661 ||| || ||| || ||||| || | ||||| | | || || | Sbjct 1395 TTCGTGTCACAGTTTTGGTGACTTCCTTGAGCCGTTGGAAATCGTAAGTTTTTTCAGGTG 1454 Query 77662 TAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTTGG 77721 | ||||||||||||||||| || ||||||| || || || || ||||||| || | Sbjct 1455 TGACAAACATGTTCAAAGCGATTGATGCTAAGTTGCATACAGCCACCTCATCAGGTGCAG 1514 Query 77722 CATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGT 77781 ||||| | || || || |||||||| || ||||| || ||||| | |||||| || | Sbjct 1515 AATATTCGACAATTTCAGTGCATAGATTGCTGCATTTAATGGTGCCAATATTTTGCTGAT 1574 Query 77782 TGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTG 77841 | || ||| |||| || | ||||| || | ||| | || || ||||| || | ||| | Sbjct 1575 TACTTTTTCTATTACAGGCATCCTTGTACAACATATAAGGTGTACCGGTCTCCACCTGGG 1634 Query 77842 ATTCGATAATAGATTTCCAGACGACTCT-AGCTTTTATCATAGATTTGTATCGCCTCTCT 77900 |||| || || | ||| | |||| | |||||| | | | || || ||| || | Sbjct 1635 ATTCAATGATGGCGAACCAAA-GACTTTGAGCTTTCACCGTC--TTATTAGCGCGTCCTT 1691 Query 77901 C--TTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAG 77958 | ||||||| | ||||||| ||| ||||| || |||||||| |||| || |||| Sbjct 1692 CCTTTTCATACTTTGTATATAATTTTTCGAATTCTTCGCCCCAAACCTCATGTAAGCCAG 1751 Query 77959 GGCATTCATTTGGGCACATCAATGACCAGTCACC---ATCTTCCTTAACTCGTTTCATAA 78015 | |||| || ||| |||||||||||||| || || | ||||| || |||| ||| | Sbjct 1752 GACATTTATGTGGACACATCAATGACCACTCTCCGTTAGCTTCC---ACACGTTCCATGA 1808 Query 78016 AGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTG 78075 | | ||| |||||||| | |||| ||||| ||||| || || || ||||| ||||| | Sbjct 1809 ATAAATCTGGTATCCACAAAGCATAAAATAAATCTCTGGCTCGGTGCTCTTCTTTTCCAG 1868 Query 78076 TATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTG 78135 ||||||| || | ||| | |||||| | |||||| | |||||||||||| | || || | Sbjct 1869 TATTCTTCTTCAAATCCAAAAACTCAAAAATATCTGCATGCCATGGTTCCAAGTAAATGG 1928 Query 78136 CCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAA 78195 | | | ||||| || || ||| |||||||||| || | || |||||| | | Sbjct 1929 CAAAGGCGCCAGGCCGCTTGCCACCACCCTGATCTACGTAACGTGCAACGTTATTGAATA 1988 Query 78196 CTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCAC 78255 | | ||||||||| | | ||| || || || |||||||| || | || | || Sbjct 1989 CCCGCAACATTGGTACCAAACCATTTGAAGTGCCATTTGTGCCCGCGATTGCTGTGCCCT 2048 Query 78256 TTGCGCGAATATTACTAATGGA----TATCCCTATTCCTCCTGCCATCTTAGATATTAGA 78311 |||| || || |||||| || || || || || || ||| || |||| | Sbjct 2049 TTGCTCGTAT----GCAATGGACATTTAGTCCAATGCCACCAGCAGACTTGGAAATTAAA 2104 Query 78312 GCGCAACGTT--TCA-ATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGA 78368 || || | | || ||||| | ||||| || || ||| | ||| | | Sbjct 2105 GCACATTGGTGGGCAGATGTA---AATATACCATCAATGGAATCACCAGCCATAGTCAAT 2161 Query 78369 AGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCA 78428 || |||||| |||| ||| | || ||| | ||| ||| | ||| ||||| ||| Sbjct 2162 AGGAAACAGGATGACAATTGCGGTTGGCGAGTGGCAGCAGCAAAGAGTGTTGGAGAGGCA 2221 Query 78429 TGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCAT 78488 || || || | ||| ||||| | || || ||||||||||| | || || || Sbjct 2222 TGTGTGAAATAGCGTTCCGAAAGCAAGTTATAAGTTTCAATAGCGGCATCAATATCTTCA 2281 Query 78489 TGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTA 78548 |||||| || | | |||||||| ||||| ||||| || | |||||| | || | Sbjct 2282 CCATGAATACCAATGGAAACACGCATTAACATGTGCTGCGGACGTTCAACAATTTTGCCA 2341 Query 78549 TTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 78608 || | || | || || || || | ||||| ||||||||||| ||||| ||| Sbjct 2342 TTCAACTTGAGTAAATAGGAACGCTCAAGTGTTTTGAAACCAAAATAATTGTAACCAAAA 2401 Query 78609 TCTCTCTCGTAAATAATAACAGAATTTA 78636 || | || || || ||| | ||||||| Sbjct 2402 TCACGGTCATATATTATAGCCGAATTTA 2429 >seq22 Length=933496 Score = 242 bits (268), Expect = 5e-59 Identities = 478/702 (68%), Gaps = 9/702 (1%) Strand=Plus/Minus Query 47975 ATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGTTTAAC 48034 |||||| || ||||| ||||| ||| | || |||||||| || || | || || Sbjct 329799 ATCTGCCACAAATTCAATATAATCAGACATTAGTTGGCAATTCATGCCAATCAAATTCAC 329740 Query 48035 TGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTAT--CGAT 48092 |||| || || || | || |||||||| || | ||||| || | || || | || Sbjct 329739 AGGTAAGGCATCAGTTAAGAATTCTTGTTCAATTTTAACAGCTTCAGCAATGATTTCAAT 329680 Query 48093 GTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATGCAAAATCA 48152 ||| || ||| |||||| | | | |||| ||||| | || |||||||| Sbjct 329679 AATACGGTC-CCT-ACTTGGCTTCTGAATGAGGTGTTGGAACATCAGGCAAGCAAAATCG 329622 Query 48153 CAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGT 48212 ||||| | ||||| || || ||||| || ||||| ||||| | ||| |||||||| Sbjct 329621 CAATGTAATCCTTCGTCCCTTGAAATTAGCTCATTAGAGAATGTCAAACCAGGCATTAGG 329562 Query 48213 CCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACG 48272 || ||||| || |||||||| |||| || ||| ||| |||||| |||||||| || Sbjct 329561 CCCCGTTTCTTCAGCCAAAAGATTGAAGCAAAACTGCCACTAAAGAAAATGCCTTCAACC 329502 Query 48273 GCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGC----TTCGTTGTGTATCCACCGTTG 48328 || |||||||| | | | || || | |||| |||| || |||||| | Sbjct 329501 GCGGCAAATGCTATTATACGTTCGCCAAAGTTGGCCGATTTCGATGAA-ATCCACGCCAG 329443 Query 48329 TGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtt 48388 ||||||||||||||| ||| ||| |||||| || || |||||||| || | | | Sbjct 329442 TGCCCAATCAGCCTTGCGCTTAACAGCAGGCATCGTCTCAATAGCATTGAACAAGTAATC 329383 Query 48389 tttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAAT 48448 ||| |||| ||| |||| || ||||| ||||| | || |||||||| || || | Sbjct 329382 CCTTTGCTTGCCATCCTTAATATATGTATCAATTAATATGCTGTACATTTCAGAATGCAC 329323 Query 48449 ATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGT 48508 ||| || || || || |||||||| || || || | ||| |||||||| || || || Sbjct 329322 ATTCTCCATGGCGATTTGAAATCCATAGAAGCAACGCGCCTCTGTGATTTGAACTTCTTG 329263 Query 48509 ACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAA 48568 | || |||||| | || || ||||| || || ||||| || ||||| ||||| || Sbjct 329262 GCTGAAGCGTTCAACTAAGTTTTCATTCACAATACCATCGGAGGCGGCAAAGAATGCCAA 329203 Query 48569 TACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTT 48628 || || ||| |||| ||| ||| || || ||| |||| |||||||| Sbjct 329202 AACGTGCGAAATGAAATGGCGTTCATTGTCGGTGAGACGCGCCCAATCATCCATATCTTT 329143 Query 48629 TGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGC 48670 || | || || ||||| | ||||| || ||||| ||||| Sbjct 329142 GGAAAGGTCAACCTCTTCCACCGTCCAGAAGGATGCTTCTGC 329101 >seq59797 Length=1646 Score = 122 bits (134), Expect = 1e-22 Identities = 191/273 (70%), Gaps = 3/273 (1%) Strand=Plus/Minus Query 48410 GTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAA 48469 ||| ||||| || ||||| || | |||||||| ||||| || || ||||| || Sbjct 1350 GTAGGTATCAATCAAAAGTGAGTAAGTCTCGGAGTGTATATTCTCCATCATAATCTGGAA 1291 Query 48470 TCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATT 48529 ||||| |||||||| ||||||| || ||||||||| | | |||| ||| | || Sbjct 1290 ACCGTAGAAACATCTTGCTTCTGCGAGCTGTACCTCGGAGGAGAATCTTTCGAGTAGGTT 1231 Query 48530 CTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTT 48589 |||||| || || || ||| || || || |||||||||||||| |||| || | || Sbjct 1230 CTCATTGACAATACCGTCAGATGCGGCGAAGAATGCTAATACATGACTAATGAAGTGCTT 1171 Query 48590 ---TTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTC 48646 || ||| || || | |||||| ||||||| || || | || | |||||| Sbjct 1170 CTCATCCTTGTTTATCTTGTTCTGCCAGTCCGTGATATCCTTCGACAAGTCCATTTCTTC 1111 Query 48647 AGCTGTCCAAAATGATGCCTCTGCTTTTTTATA 48679 || ||||| || || || |||||||| || || Sbjct 1110 TGCAGTCCAGAAAGAAGCTTCTGCTTTCTTGTA 1078 Score = 100 bits (110), Expect = 4e-16 Identities = 149/209 (71%), Gaps = 7/209 (3%) Strand=Plus/Minus Query 48176 AATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATAT 48235 ||||||||| ||||| ||||| | ||| ||||| | || | || |||||||| || || Sbjct 1635 AATTAATTCATTAGAGAATGTCAAACCAGGCATCAAACCTCTCTTCTTGAGCCAGAAAAT 1576 Query 48236 TGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTC 48295 | || || || ||||| ||||| || ||||||||||| |||||||| |||||||| Sbjct 1575 GGATGCAAATGAACCAGAGAAGAAAATACCTTCTACGGCAGCAAATGCTACTAGTCTCTC 1516 Query 48296 TCCGTAACTG--GCT---TCGTTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTT 48350 || || || ||| |||| | |||||| |||||| ||||| || ||| Sbjct 1515 ACC--AAATGATGCTTTCTCGTCATTGATCCACTTAACTGCCCAGTCAGCTTTGCGCTTA 1458 Query 48351 ACACAAGGCATTGTTTCTATAGCATTAAA 48379 | || || || ||||| ||||| || || Sbjct 1457 ATGCATGGAATAGTTTCAATAGCGTTGAA 1429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 693916213188800