Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq13731 576 2e-159
seq22 242 5e-59
seq59797 122 1e-22
>seq13731
Length=15303
Score = 576 bits (638), Expect = 2e-159
Identities = 1272/1888 (67%), Gaps = 38/1888 (2%)
Strand=Plus/Plus
Query 76771 TCTTATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATAC 76830
|||| |||| ||||| || || | | | || ||||| ||||||| |||||||| |
Sbjct 558 TCTTGTCCACAGTAAATTGTATAGCATTTGCAGCAGGTTTGGTACGTAAGTAGTACATTC 617
Query 76831 CAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAG 76890
| |||||||||||| |||| || |||||||| || || |||||| ||| | |
Sbjct 618 CTGTTTTTAGACCCGCTTTCCAGCCATAGAAATGTATAGAAGTTAGTTTGCCATAGTTTG 677
Query 76891 GATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCG 76950
| || || | ||| || || | ||| || ||||| |||||||| ||||| | ||| || |
Sbjct 678 GCTCTGCGACATGTATGTTAAACGATTGGCTTTGGTCGATGAATGCTCCCCGATCTGCTG 737
Query 76951 CCATTTTTATAATGGTCTTTTGAG-GA-ATTTCCCAAATAGTTTTGAAAACTTGTTTGAT 77008
||||||| || || |||| | || |||||||| | ||||||| | | | ||
Sbjct 738 CCATTTTAAT--TGAAGTTTTAACCGAGATTTCCCATACAGTTTTGTACAGATCGCGAAT 795
Query 77009 ATCATCTGGAA-GGTTTGTATT--TTGAATGGAACCACCATCTGATATAATTGTATTCTT 77065
| | || | || || ||| ||| ||||| |||| | |||||| |||| ||
Sbjct 796 GTGCTGCGGTATGGATTCTATGCCTTGTATGGAGCCACGGCTAGTAATAATTTTATTTTT 855
Query 77066 TATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACTAT 77125
|| ||||||| |||||| | ||| || | | | | || | |||| |||| || |
Sbjct 856 CATGTCATCATCCCACAAACCCAACTCAGTGAGATCGCGCAGCAAATGATGATTTACAAC 915
Query 77126 TTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGA 77185
||||||||| ||||| | ||| | ||| ||||| || ||| || || ||||| | ||
Sbjct 916 TTGAAATTCGCCAGAGAGTACGCGACGTGTGTAGATGTTAGAAGTGTAGGGTTCGAATGA 975
Query 77186 TTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACT 77245
||||| || |||| ||||| ||||| ||||| || ||||||||||| | || |
Sbjct 976 CTCATTATTGCCCATGATTTGCGCAGTTGAAGCGGTGGGCATAGGTGCAAGCAGGAGGGA 1035
Query 77246 ATTTCTGAGACCATG-TGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTG 77304
||| || | |||||| |||| | ||||| || || | | | |||| | ||| || || |
Sbjct 1036 ATTCCTAACACCATGCTGTT-TAATTTTCTCCTTCAATTCTGTCCAGTTCCAGAGCTCAG 1094
Query 77305 AAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCATTAT 77364
|| |||||| | || |||||||||||||| || ||| | | || | ||
Sbjct 1095 TGGGCTTCTTATCCCACATGTCATATTGTAGAATTCCCTTGCTAACTGGACAGCCTTCAT 1154
Query 77365 ATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTAAT 77424
| |||||||| | || | | | ||||| | ||||||||| ||||| ||||| || ||||
Sbjct 1155 AAGTTTCATAGGTACCGTATTTCTCAGCCAATTCACAACTAGCTTCTAATGCACCATAAT 1214
Query 77425 AAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGATAAT 77484
|||| |||||||||| || | ||| | | ||||| || || |||||||
Sbjct 1215 AAATGGTTTCGAAAACCTGTTGATTTAAAAGGAATGCTTGTTCGCTTTCGTACGGATAGC 1274
Query 77485 GTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCTCT 77544
| | ||| |||| || ||||| || || || || || || || || || | |||||
Sbjct 1275 GCATAAGTATAAGAGCGTCTGCAAAACCTTGTACGCCGATCCCGATTGGACGGTGTCTAA 1334
Query 77545 TATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAGAT 77604
|| || |||| || || || | || || | ||| || || || |||||||| | ||
Sbjct 1335 AGTTTGATTTTTTTGCCTCGGGCAATGGGTAGTGATTTATTTCAATGATTTTATTCAAAT 1394
Query 77605 TTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAA---TCTTCCATCTA 77661
||| || ||| || ||||| || | ||||| | | || || |
Sbjct 1395 TTCGTGTCACAGTTTTGGTGACTTCCTTGAGCCGTTGGAAATCGTAAGTTTTTTCAGGTG 1454
Query 77662 TAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTTGG 77721
| ||||||||||||||||| || ||||||| || || || || ||||||| || |
Sbjct 1455 TGACAAACATGTTCAAAGCGATTGATGCTAAGTTGCATACAGCCACCTCATCAGGTGCAG 1514
Query 77722 CATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGT 77781
||||| | || || || |||||||| || ||||| || ||||| | |||||| || |
Sbjct 1515 AATATTCGACAATTTCAGTGCATAGATTGCTGCATTTAATGGTGCCAATATTTTGCTGAT 1574
Query 77782 TGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTG 77841
| || ||| |||| || | ||||| || | ||| | || || ||||| || | ||| |
Sbjct 1575 TACTTTTTCTATTACAGGCATCCTTGTACAACATATAAGGTGTACCGGTCTCCACCTGGG 1634
Query 77842 ATTCGATAATAGATTTCCAGACGACTCT-AGCTTTTATCATAGATTTGTATCGCCTCTCT 77900
|||| || || | ||| | |||| | |||||| | | | || || ||| || |
Sbjct 1635 ATTCAATGATGGCGAACCAAA-GACTTTGAGCTTTCACCGTC--TTATTAGCGCGTCCTT 1691
Query 77901 C--TTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAG 77958
| ||||||| | ||||||| ||| ||||| || |||||||| |||| || ||||
Sbjct 1692 CCTTTTCATACTTTGTATATAATTTTTCGAATTCTTCGCCCCAAACCTCATGTAAGCCAG 1751
Query 77959 GGCATTCATTTGGGCACATCAATGACCAGTCACC---ATCTTCCTTAACTCGTTTCATAA 78015
| |||| || ||| |||||||||||||| || || | ||||| || |||| ||| |
Sbjct 1752 GACATTTATGTGGACACATCAATGACCACTCTCCGTTAGCTTCC---ACACGTTCCATGA 1808
Query 78016 AGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTG 78075
| | ||| |||||||| | |||| ||||| ||||| || || || ||||| ||||| |
Sbjct 1809 ATAAATCTGGTATCCACAAAGCATAAAATAAATCTCTGGCTCGGTGCTCTTCTTTTCCAG 1868
Query 78076 TATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTG 78135
||||||| || | ||| | |||||| | |||||| | |||||||||||| | || || |
Sbjct 1869 TATTCTTCTTCAAATCCAAAAACTCAAAAATATCTGCATGCCATGGTTCCAAGTAAATGG 1928
Query 78136 CCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAA 78195
| | | ||||| || || ||| |||||||||| || | || |||||| | |
Sbjct 1929 CAAAGGCGCCAGGCCGCTTGCCACCACCCTGATCTACGTAACGTGCAACGTTATTGAATA 1988
Query 78196 CTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCAC 78255
| | ||||||||| | | ||| || || || |||||||| || | || | ||
Sbjct 1989 CCCGCAACATTGGTACCAAACCATTTGAAGTGCCATTTGTGCCCGCGATTGCTGTGCCCT 2048
Query 78256 TTGCGCGAATATTACTAATGGA----TATCCCTATTCCTCCTGCCATCTTAGATATTAGA 78311
|||| || || |||||| || || || || || || ||| || |||| |
Sbjct 2049 TTGCTCGTAT----GCAATGGACATTTAGTCCAATGCCACCAGCAGACTTGGAAATTAAA 2104
Query 78312 GCGCAACGTT--TCA-ATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGA 78368
|| || | | || ||||| | ||||| || || ||| | ||| | |
Sbjct 2105 GCACATTGGTGGGCAGATGTA---AATATACCATCAATGGAATCACCAGCCATAGTCAAT 2161
Query 78369 AGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCA 78428
|| |||||| |||| ||| | || ||| | ||| ||| | ||| ||||| |||
Sbjct 2162 AGGAAACAGGATGACAATTGCGGTTGGCGAGTGGCAGCAGCAAAGAGTGTTGGAGAGGCA 2221
Query 78429 TGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCAT 78488
|| || || | ||| ||||| | || || ||||||||||| | || || ||
Sbjct 2222 TGTGTGAAATAGCGTTCCGAAAGCAAGTTATAAGTTTCAATAGCGGCATCAATATCTTCA 2281
Query 78489 TGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTA 78548
|||||| || | | |||||||| ||||| ||||| || | |||||| | || |
Sbjct 2282 CCATGAATACCAATGGAAACACGCATTAACATGTGCTGCGGACGTTCAACAATTTTGCCA 2341
Query 78549 TTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 78608
|| | || | || || || || | ||||| ||||||||||| ||||| |||
Sbjct 2342 TTCAACTTGAGTAAATAGGAACGCTCAAGTGTTTTGAAACCAAAATAATTGTAACCAAAA 2401
Query 78609 TCTCTCTCGTAAATAATAACAGAATTTA 78636
|| | || || || ||| | |||||||
Sbjct 2402 TCACGGTCATATATTATAGCCGAATTTA 2429
>seq22
Length=933496
Score = 242 bits (268), Expect = 5e-59
Identities = 478/702 (68%), Gaps = 9/702 (1%)
Strand=Plus/Minus
Query 47975 ATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGTTTAAC 48034
|||||| || ||||| ||||| ||| | || |||||||| || || | || ||
Sbjct 329799 ATCTGCCACAAATTCAATATAATCAGACATTAGTTGGCAATTCATGCCAATCAAATTCAC 329740
Query 48035 TGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTAT--CGAT 48092
|||| || || || | || |||||||| || | ||||| || | || || | ||
Sbjct 329739 AGGTAAGGCATCAGTTAAGAATTCTTGTTCAATTTTAACAGCTTCAGCAATGATTTCAAT 329680
Query 48093 GTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATGCAAAATCA 48152
||| || ||| |||||| | | | |||| ||||| | || ||||||||
Sbjct 329679 AATACGGTC-CCT-ACTTGGCTTCTGAATGAGGTGTTGGAACATCAGGCAAGCAAAATCG 329622
Query 48153 CAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGT 48212
||||| | ||||| || || ||||| || ||||| ||||| | ||| ||||||||
Sbjct 329621 CAATGTAATCCTTCGTCCCTTGAAATTAGCTCATTAGAGAATGTCAAACCAGGCATTAGG 329562
Query 48213 CCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACG 48272
|| ||||| || |||||||| |||| || ||| ||| |||||| |||||||| ||
Sbjct 329561 CCCCGTTTCTTCAGCCAAAAGATTGAAGCAAAACTGCCACTAAAGAAAATGCCTTCAACC 329502
Query 48273 GCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGC----TTCGTTGTGTATCCACCGTTG 48328
|| |||||||| | | | || || | |||| |||| || |||||| |
Sbjct 329501 GCGGCAAATGCTATTATACGTTCGCCAAAGTTGGCCGATTTCGATGAA-ATCCACGCCAG 329443
Query 48329 TGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtt 48388
||||||||||||||| ||| ||| |||||| || || |||||||| || | | |
Sbjct 329442 TGCCCAATCAGCCTTGCGCTTAACAGCAGGCATCGTCTCAATAGCATTGAACAAGTAATC 329383
Query 48389 tttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAAT 48448
||| |||| ||| |||| || ||||| ||||| | || |||||||| || || |
Sbjct 329382 CCTTTGCTTGCCATCCTTAATATATGTATCAATTAATATGCTGTACATTTCAGAATGCAC 329323
Query 48449 ATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGT 48508
||| || || || || |||||||| || || || | ||| |||||||| || || ||
Sbjct 329322 ATTCTCCATGGCGATTTGAAATCCATAGAAGCAACGCGCCTCTGTGATTTGAACTTCTTG 329263
Query 48509 ACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAA 48568
| || |||||| | || || ||||| || || ||||| || ||||| ||||| ||
Sbjct 329262 GCTGAAGCGTTCAACTAAGTTTTCATTCACAATACCATCGGAGGCGGCAAAGAATGCCAA 329203
Query 48569 TACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTT 48628
|| || ||| |||| ||| ||| || || ||| |||| ||||||||
Sbjct 329202 AACGTGCGAAATGAAATGGCGTTCATTGTCGGTGAGACGCGCCCAATCATCCATATCTTT 329143
Query 48629 TGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGC 48670
|| | || || ||||| | ||||| || ||||| |||||
Sbjct 329142 GGAAAGGTCAACCTCTTCCACCGTCCAGAAGGATGCTTCTGC 329101
>seq59797
Length=1646
Score = 122 bits (134), Expect = 1e-22
Identities = 191/273 (70%), Gaps = 3/273 (1%)
Strand=Plus/Minus
Query 48410 GTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAA 48469
||| ||||| || ||||| || | |||||||| ||||| || || ||||| ||
Sbjct 1350 GTAGGTATCAATCAAAAGTGAGTAAGTCTCGGAGTGTATATTCTCCATCATAATCTGGAA 1291
Query 48470 TCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATT 48529
||||| |||||||| ||||||| || ||||||||| | | |||| ||| | ||
Sbjct 1290 ACCGTAGAAACATCTTGCTTCTGCGAGCTGTACCTCGGAGGAGAATCTTTCGAGTAGGTT 1231
Query 48530 CTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTT 48589
|||||| || || || ||| || || || |||||||||||||| |||| || | ||
Sbjct 1230 CTCATTGACAATACCGTCAGATGCGGCGAAGAATGCTAATACATGACTAATGAAGTGCTT 1171
Query 48590 ---TTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTC 48646
|| ||| || || | |||||| ||||||| || || | || | ||||||
Sbjct 1170 CTCATCCTTGTTTATCTTGTTCTGCCAGTCCGTGATATCCTTCGACAAGTCCATTTCTTC 1111
Query 48647 AGCTGTCCAAAATGATGCCTCTGCTTTTTTATA 48679
|| ||||| || || || |||||||| || ||
Sbjct 1110 TGCAGTCCAGAAAGAAGCTTCTGCTTTCTTGTA 1078
Score = 100 bits (110), Expect = 4e-16
Identities = 149/209 (71%), Gaps = 7/209 (3%)
Strand=Plus/Minus
Query 48176 AATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATAT 48235
||||||||| ||||| ||||| | ||| ||||| | || | || |||||||| || ||
Sbjct 1635 AATTAATTCATTAGAGAATGTCAAACCAGGCATCAAACCTCTCTTCTTGAGCCAGAAAAT 1576
Query 48236 TGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTC 48295
| || || || ||||| ||||| || ||||||||||| |||||||| ||||||||
Sbjct 1575 GGATGCAAATGAACCAGAGAAGAAAATACCTTCTACGGCAGCAAATGCTACTAGTCTCTC 1516
Query 48296 TCCGTAACTG--GCT---TCGTTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTT 48350
|| || || ||| |||| | |||||| |||||| ||||| || |||
Sbjct 1515 ACC--AAATGATGCTTTCTCGTCATTGATCCACTTAACTGCCCAGTCAGCTTTGCGCTTA 1458
Query 48351 ACACAAGGCATTGTTTCTATAGCATTAAA 48379
| || || || ||||| ||||| || ||
Sbjct 1457 ATGCATGGAATAGTTTCAATAGCGTTGAA 1429
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 693916213188800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |