Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq13731 567 1e-156 seq22 233 3e-56 seq59797 111 2e-19 >seq13731 Length=15303 Score = 567 bits (628), Expect = 1e-156 Identities = 1250/1853 (67%), Gaps = 32/1853 (2%) Strand=Plus/Plus Query 75398 GCTGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAA 75457 || ||||| ||||||| |||||||| || |||||||||||| |||| || |||||| Sbjct 590 GCAGGTTTGGTACGTAAGTAGTACATTCCTGTTTTTAGACCCGCTTTCCAGCCATAGAAA 649 Query 75458 TGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATATTCATCGACTGACTT 75517 || || ||||||||| ||| | || || || | ||| || || | ||| || ||| Sbjct 650 TGTATAGAAGTTAGTTTGCCATAGTTTGGCTCTGCGACATGTATGTTAAACGATTGGCTT 709 Query 75518 TGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAG-GA-ATTT 75575 || |||||||| ||||| | ||| || |||||||| || || |||| | || |||| Sbjct 710 TGGTCGATGAATGCTCCCCGATCTGCTGCCATTTTAAT--TGAAGTTTTAACCGAGATTT 767 Query 75576 CCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA--GATT-TGTATTTTGAATGG 75632 |||| | ||||||| | | | || | | || | |||| | | ||| |||| Sbjct 768 CCCATACAGTTTTGTACAGATCGCGAATGTGCTGCGGTATGGATTCTATGCCTTGTATGG 827 Query 75633 ATCCGCCATCAGATATAATTGTATTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTA 75692 | || | || |||||| |||| || || ||||||| |||||| ||| || | Sbjct 828 AGCCACGGCTAGTAATAATTTTATTTTTCATGTCATCATCCCACAAACCCAACTCAGTGA 887 Query 75693 AAACTCTAAGGAGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGT 75752 | | | || | |||| |||| |||| ||||||||| ||||| | ||| | || |||| Sbjct 888 GATCGCGCAGCAAATGATGATTTACAACTTGAAATTCGCCAGAGAGTACGCGACGTGTGT 947 Query 75753 AAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAG 75812 | || ||| || || ||||| | || ||||| || |||| ||||| |||||||||| Sbjct 948 AGATGTTAGAAGTGTAGGGTTCGAATGACTCATTATTGCCCATGATTTGCGCAGTTGAAG 1007 Query 75813 CAGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATG-TGTTCTGATTTTATCT 75871 | || ||||||||||| | || | ||| || | |||||| |||| | ||||| || Sbjct 1008 CGGTGGGCATAGGTGCAAGCAGGAGGGAATTCCTAACACCATGCTGTT-TAATTTTCTCC 1066 Query 75872 TTTAGATATTTCCAATCCCAAAGATCTGATGGTACAACATCCCAGAGATCGTATTGTAGA 75931 || | | | |||| | ||| || || | || |||||| | || ||||||||| Sbjct 1067 TTCAATTCTGTCCAGTTCCAGAGCTCAGTGGGCTTCTTATCCCACATGTCATATTGTAGA 1126 Query 75932 ATTCCGTTGCTAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGT 75991 ||||| |||||| | | || | ||| ||||| || || |||| || ||||| | | Sbjct 1127 ATTCCCTTGCTAACTGGACAGCCTTCATAAGTTTCATAGGTACCGTATTTCTCAGCCAAT 1186 Query 75992 TCGCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCT 76051 || ||||| || ||||| ||||| |||||||| |||||||||| || | ||| | | Sbjct 1187 TCACAACTAGCTTCTAATGCACCATAATAAATGGTTTCGAAAACCTGTTGATTTAAAAGG 1246 Query 76052 TGCGCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGA 76111 |||| || || | ||||| | | ||| |||| || ||||| | || || Sbjct 1247 AATGCTTGTTCGCTTTCGTACGGATAGCGCATAAGTATAAGAGCGTCTGCAAAACCTTGT 1306 Query 76112 ACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAA 76171 || || || || || || | ||||| || || ||| || || || | ||||| Sbjct 1307 ACGCCGATCCCGATTGGACGGTGTCTAAAGTTTGATTTTTTTGCCTCGGGCAATGGGTAG 1366 Query 76172 TAATTAATATCTATAATTTTATTGAGATTTC-TGACAACTACTTTAACCACGTCCTTTAG 76230 | ||| || || || |||||||| | ||||| || || | ||| || ||||| || Sbjct 1367 TGATTTATTTCAATGATTTTATTCAAATTTCGTGTCA-CAGTTTTGGTGACTTCCTTGAG 1425 Query 76231 TTTGAGAAAATCAAA---TTTTCCATCTATCACAAACATATTAAGAGCTATAGATGCTAG 76287 | ||||| | |||| || | | |||||||| || | ||| || ||||||| Sbjct 1426 CCGTTGGAAATCGTAAGTTTTTTCAGGTGTGACAAACATGTTCAAAGCGATTGATGCTAA 1485 Query 76288 ATTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACT 76347 || || || || ||||||| || | ||||| | || || ||||||||||| || Sbjct 1486 GTTGCATACAGCCACCTCATCAGGTGCAGAATATTCGACAATTTCAGTGCATAGATTGCT 1545 Query 76348 ACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAG 76407 || || || || |||| |||||| || || || ||| | ||||| | ||||| || | Sbjct 1546 GCATTTAATGGTGCCAATATTTTGCTGATTACTTTTTCTATTACAGGCATCCTTGTACAA 1605 Query 76408 AACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCT-AG 76466 | | | || || || || || | ||| ||||| || || | ||| | |||| | || Sbjct 1606 CATATAAGGTGTACCGGTCTCCACCTGGGATTCAATGATGGCGAACCAAA-GACTTTGAG 1664 Query 76467 CTTTTATTATAGATTTGTATCGCTTCTCTC--TTTCATATTGTGTATATAACCGTTCAAA 76524 |||| | | || || ||| || || ||||||| | ||||||||| ||| || Sbjct 1665 CTTTCACCGTC--TTATTAGCGCGTCCTTCCTTTTCATACTTTGTATATAATTTTTCGAA 1722 Query 76525 TTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCACTC 76584 ||| || |||||||| |||| || |||||||||| || |||||||||||||||||||| Sbjct 1723 TTCTTCGCCCCAAACCTCATGTAAGCCAGGACATTTATGTGGACACATCAATGACCACTC 1782 Query 76585 ACC---ATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAG 76641 || | ||||| || |||| ||| || | ||| |||||||| | |||| ||||| Sbjct 1783 TCCGTTAGCTTCC---ACACGTTCCATGAATAAATCTGGTATCCACAAAGCATAAAATAA 1839 Query 76642 ATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAAT 76701 ||||| || || | ||||| ||||| |||||||| || | ||| | ||||| | ||| Sbjct 1840 ATCTCTGGCTCGGTGCTCTTCTTTTCCAGTATTCTTCTTCAAATCCAAAAACTCAAAAAT 1899 Query 76702 ATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTG 76761 ||| | |||||||||||| | || || || | | || || || || ||| ||||| Sbjct 1900 ATCTGCATGCCATGGTTCCAAGTAAATGGCAAAGGCGCCAGGCCGCTTGCCACCACCCTG 1959 Query 76762 ATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGT 76821 ||||| || | ||| |||||| | || | ||||||||| | | || || || || Sbjct 1960 ATCTACGTAACGTGCAACGTTATTGAATACCCGCAACATTGGTACCAAACCATTTGAAGT 2019 Query 76822 ACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTAT 76881 |||||||| || | || | || ||| || || | | | ||| || || Sbjct 2020 GCCATTTGTGCCCGCGATTGCTGTGCCCTTTGCTCGTATGCAATGGACATTTAGTCCAAT 2079 Query 76882 TCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTT--TCA-ATGTGTCATAGATGCCCTC 76938 || || || || || |||| |||||| | | || |||| | | || || || Sbjct 2080 GCCACCAGCAGACTTGGAAATTAAAGCACATTGGTGGGCAGATGT---AAATATACCATC 2136 Query 76939 TATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCC 76998 || |||| | ||| | | || |||||| |||| ||| | || ||| | Sbjct 2137 AATGGAATCACCAGCCATAGTCAATAGGAAACAGGATGACAATTGCGGTTGGCGAGTGGC 2196 Query 76999 TGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGT 77058 ||| ||| | ||| ||||| ||||| ||||| | ||| ||||| | || || || Sbjct 2197 AGCAGCAAAGAGTGTTGGAGAGGCATGTGTGAAATAGCGTTCCGAAAGCAAGTTATAAGT 2256 Query 77059 TTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATATG 77118 ||||||| | || || ||||| |||||| || | | |||||||| ||||| || Sbjct 2257 TTCAATAGCGGCATCAATATCTTCACCATGAATACCAATGGAAACACGCATTAACATGTG 2316 Query 77119 CTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTT 77178 ||| || ||||| ||| | || ||| | || | || || || || | ||||| Sbjct 2317 CTGCGGACGTTCAACAATTTTGCCATTCAACTTGAGTAAATAGGAACGCTCAAGTGTTTT 2376 Query 77179 AAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACCGAATTTA 77231 ||||||||||| ||||| ||| || | || || || ||| ||||||||| Sbjct 2377 GAAACCAAAATAATTGTAACCAAAATCACGGTCATATATTATAGCCGAATTTA 2429 >seq22 Length=933496 Score = 233 bits (258), Expect = 3e-56 Identities = 476/701 (68%), Gaps = 7/701 (1%) Strand=Plus/Minus Query 46464 ATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGTTTGAC 46523 |||||| || ||||| ||||| ||| | || |||||||| || || | || || Sbjct 329799 ATCTGCCACAAATTCAATATAATCAGACATTAGTTGGCAATTCATGCCAATCAAATTCAC 329740 Query 46524 CGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTAT--CGAT 46581 |||| || || || | || ||||||||||| | ||||| || | || || | || Sbjct 329739 AGGTAAGGCATCAGTTAAGAATTCTTGTTCAATTTTAACAGCTTCAGCAATGATTTCAAT 329680 Query 46582 GTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCAAAATCA 46641 ||| || ||| |||||| || || | |||| ||||| | || |||||||| Sbjct 329679 AATACGGTC-CCT-ACTTGGCTTCTGAATGAGGTGTTGGAACATCAGGCAAGCAAAATCG 329622 Query 46642 CAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGT 46701 ||||| | ||||| || || ||||| || ||||| ||||| | ||||||||||| Sbjct 329621 CAATGTAATCCTTCGTCCCTTGAAATTAGCTCATTAGAGAATGTCAAACCAGGCATTAGG 329562 Query 46702 CCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACA 46761 || || || || |||||||| || | || ||| ||| |||||| |||||||| || Sbjct 329561 CCCCGTTTCTTCAGCCAAAAGATTGAAGCAAAACTGCCACTAAAGAAAATGCCTTCAACC 329502 Query 46762 GCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGC--ATCATTATG-AATCCACCTTTGA 46818 || || ||||| | | | || || | |||| || ||| ||||||| | Sbjct 329501 GCGGCAAATGCTATTATACGTTCGCCAAAGTTGGCCGATTTCGATGAAATCCACGCCAGT 329442 Query 46819 GCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGttt 46878 |||||||||||||| ||| ||| |||||| || || |||||||| || | | | Sbjct 329441 GCCCAATCAGCCTTGCGCTTAACAGCAGGCATCGTCTCAATAGCATTGAACAAGTAATCC 329382 Query 46879 ttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATG 46938 ||| | | ||| |||| ||||||||| ||||| | || |||||||| ||||| | Sbjct 329381 CTTTGCTTGCCATCCTTAATATATGTATCAATTAATATGCTGTACATTTCAGAATGCACA 329322 Query 46939 TTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTA 46998 || || || || || |||||||| || || || | || || || || || || ||| Sbjct 329321 TTCTCCATGGCGATTTGAAATCCATAGAAGCAACGCGCCTCTGTGATTTGAACTTCTTGG 329262 Query 46999 CAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAAT 47058 | || |||||| || || |||||||| || ||||| || ||||| |||||||| Sbjct 329261 CTGAAGCGTTCAACTAAGTTTTCATTCACAATACCATCGGAGGCGGCAAAGAATGCCAAA 329202 Query 47059 ACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTT 47118 || || ||| |||| ||||| | || || ||| |||| |||||||| Sbjct 329201 ACGTGCGAAATGAAATGGCGTTCATTGTCGGTGAGACGCGCCCAATCATCCATATCTTTG 329142 Query 47119 GATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGC 47159 || | || || ||||| | |||||||| || || ||||| Sbjct 329141 GAAAGGTCAACCTCTTCCACCGTCCAGAAGGATGCTTCTGC 329101 >seq59797 Length=1646 Score = 111 bits (122), Expect = 2e-19 Identities = 188/272 (69%), Gaps = 3/272 (1%) Strand=Plus/Minus Query 46900 TATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAAT 46959 || ||||| || ||||| || | || || || || || || || ||||| || Sbjct 1349 TAGGTATCAATCAAAAGTGAGTAAGTCTCGGAGTGTATATTCTCCATCATAATCTGGAAA 1290 Query 46960 CCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTC 47019 ||||| |||||||||||||| | | ||||||||| | | |||| ||| | ||| Sbjct 1289 CCGTAGAAACATCTTGCTTCTGCGAGCTGTACCTCGGAGGAGAATCTTTCGAGTAGGTTC 1230 Query 47020 TCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTT 47079 ||||| || || || ||| || || || ||||| |||||||| |||| || | || Sbjct 1229 TCATTGACAATACCGTCAGATGCGGCGAAGAATGCTAATACATGACTAATGAAGTGCTTC 1170 Query 47080 TCATC---GGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCA 47136 ||||| | | || || | |||||| ||||||| || || | || | |||||| Sbjct 1169 TCATCCTTGTTTATCTTGTTCTGCCAGTCCGTGATATCCTTCGACAAGTCCATTTCTTCT 1110 Query 47137 GCTGTCCAGAATGACGCCTCTGCTTTTTTATA 47168 || |||||||| || || |||||||| || || Sbjct 1109 GCAGTCCAGAAAGAAGCTTCTGCTTTCTTGTA 1078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712162024694400