Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq13731 567 1e-156
seq22 233 3e-56
seq59797 111 2e-19
>seq13731
Length=15303
Score = 567 bits (628), Expect = 1e-156
Identities = 1250/1853 (67%), Gaps = 32/1853 (2%)
Strand=Plus/Plus
Query 75398 GCTGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAA 75457
|| ||||| ||||||| |||||||| || |||||||||||| |||| || ||||||
Sbjct 590 GCAGGTTTGGTACGTAAGTAGTACATTCCTGTTTTTAGACCCGCTTTCCAGCCATAGAAA 649
Query 75458 TGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATATTCATCGACTGACTT 75517
|| || ||||||||| ||| | || || || | ||| || || | ||| || |||
Sbjct 650 TGTATAGAAGTTAGTTTGCCATAGTTTGGCTCTGCGACATGTATGTTAAACGATTGGCTT 709
Query 75518 TGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAG-GA-ATTT 75575
|| |||||||| ||||| | ||| || |||||||| || || |||| | || ||||
Sbjct 710 TGGTCGATGAATGCTCCCCGATCTGCTGCCATTTTAAT--TGAAGTTTTAACCGAGATTT 767
Query 75576 CCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA--GATT-TGTATTTTGAATGG 75632
|||| | ||||||| | | | || | | || | |||| | | ||| ||||
Sbjct 768 CCCATACAGTTTTGTACAGATCGCGAATGTGCTGCGGTATGGATTCTATGCCTTGTATGG 827
Query 75633 ATCCGCCATCAGATATAATTGTATTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTA 75692
| || | || |||||| |||| || || ||||||| |||||| ||| || |
Sbjct 828 AGCCACGGCTAGTAATAATTTTATTTTTCATGTCATCATCCCACAAACCCAACTCAGTGA 887
Query 75693 AAACTCTAAGGAGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGT 75752
| | | || | |||| |||| |||| ||||||||| ||||| | ||| | || ||||
Sbjct 888 GATCGCGCAGCAAATGATGATTTACAACTTGAAATTCGCCAGAGAGTACGCGACGTGTGT 947
Query 75753 AAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAG 75812
| || ||| || || ||||| | || ||||| || |||| ||||| ||||||||||
Sbjct 948 AGATGTTAGAAGTGTAGGGTTCGAATGACTCATTATTGCCCATGATTTGCGCAGTTGAAG 1007
Query 75813 CAGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATG-TGTTCTGATTTTATCT 75871
| || ||||||||||| | || | ||| || | |||||| |||| | ||||| ||
Sbjct 1008 CGGTGGGCATAGGTGCAAGCAGGAGGGAATTCCTAACACCATGCTGTT-TAATTTTCTCC 1066
Query 75872 TTTAGATATTTCCAATCCCAAAGATCTGATGGTACAACATCCCAGAGATCGTATTGTAGA 75931
|| | | | |||| | ||| || || | || |||||| | || |||||||||
Sbjct 1067 TTCAATTCTGTCCAGTTCCAGAGCTCAGTGGGCTTCTTATCCCACATGTCATATTGTAGA 1126
Query 75932 ATTCCGTTGCTAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGT 75991
||||| |||||| | | || | ||| ||||| || || |||| || ||||| | |
Sbjct 1127 ATTCCCTTGCTAACTGGACAGCCTTCATAAGTTTCATAGGTACCGTATTTCTCAGCCAAT 1186
Query 75992 TCGCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCT 76051
|| ||||| || ||||| ||||| |||||||| |||||||||| || | ||| | |
Sbjct 1187 TCACAACTAGCTTCTAATGCACCATAATAAATGGTTTCGAAAACCTGTTGATTTAAAAGG 1246
Query 76052 TGCGCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGA 76111
|||| || || | ||||| | | ||| |||| || ||||| | || ||
Sbjct 1247 AATGCTTGTTCGCTTTCGTACGGATAGCGCATAAGTATAAGAGCGTCTGCAAAACCTTGT 1306
Query 76112 ACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAA 76171
|| || || || || || | ||||| || || ||| || || || | |||||
Sbjct 1307 ACGCCGATCCCGATTGGACGGTGTCTAAAGTTTGATTTTTTTGCCTCGGGCAATGGGTAG 1366
Query 76172 TAATTAATATCTATAATTTTATTGAGATTTC-TGACAACTACTTTAACCACGTCCTTTAG 76230
| ||| || || || |||||||| | ||||| || || | ||| || ||||| ||
Sbjct 1367 TGATTTATTTCAATGATTTTATTCAAATTTCGTGTCA-CAGTTTTGGTGACTTCCTTGAG 1425
Query 76231 TTTGAGAAAATCAAA---TTTTCCATCTATCACAAACATATTAAGAGCTATAGATGCTAG 76287
| ||||| | |||| || | | |||||||| || | ||| || |||||||
Sbjct 1426 CCGTTGGAAATCGTAAGTTTTTTCAGGTGTGACAAACATGTTCAAAGCGATTGATGCTAA 1485
Query 76288 ATTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACT 76347
|| || || || ||||||| || | ||||| | || || ||||||||||| ||
Sbjct 1486 GTTGCATACAGCCACCTCATCAGGTGCAGAATATTCGACAATTTCAGTGCATAGATTGCT 1545
Query 76348 ACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAG 76407
|| || || || |||| |||||| || || || ||| | ||||| | ||||| || |
Sbjct 1546 GCATTTAATGGTGCCAATATTTTGCTGATTACTTTTTCTATTACAGGCATCCTTGTACAA 1605
Query 76408 AACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCT-AG 76466
| | | || || || || || | ||| ||||| || || | ||| | |||| | ||
Sbjct 1606 CATATAAGGTGTACCGGTCTCCACCTGGGATTCAATGATGGCGAACCAAA-GACTTTGAG 1664
Query 76467 CTTTTATTATAGATTTGTATCGCTTCTCTC--TTTCATATTGTGTATATAACCGTTCAAA 76524
|||| | | || || ||| || || ||||||| | ||||||||| ||| ||
Sbjct 1665 CTTTCACCGTC--TTATTAGCGCGTCCTTCCTTTTCATACTTTGTATATAATTTTTCGAA 1722
Query 76525 TTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCACTC 76584
||| || |||||||| |||| || |||||||||| || ||||||||||||||||||||
Sbjct 1723 TTCTTCGCCCCAAACCTCATGTAAGCCAGGACATTTATGTGGACACATCAATGACCACTC 1782
Query 76585 ACC---ATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAG 76641
|| | ||||| || |||| ||| || | ||| |||||||| | |||| |||||
Sbjct 1783 TCCGTTAGCTTCC---ACACGTTCCATGAATAAATCTGGTATCCACAAAGCATAAAATAA 1839
Query 76642 ATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAAT 76701
||||| || || | ||||| ||||| |||||||| || | ||| | ||||| | |||
Sbjct 1840 ATCTCTGGCTCGGTGCTCTTCTTTTCCAGTATTCTTCTTCAAATCCAAAAACTCAAAAAT 1899
Query 76702 ATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTG 76761
||| | |||||||||||| | || || || | | || || || || ||| |||||
Sbjct 1900 ATCTGCATGCCATGGTTCCAAGTAAATGGCAAAGGCGCCAGGCCGCTTGCCACCACCCTG 1959
Query 76762 ATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGT 76821
||||| || | ||| |||||| | || | ||||||||| | | || || || ||
Sbjct 1960 ATCTACGTAACGTGCAACGTTATTGAATACCCGCAACATTGGTACCAAACCATTTGAAGT 2019
Query 76822 ACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTAT 76881
|||||||| || | || | || ||| || || | | | ||| || ||
Sbjct 2020 GCCATTTGTGCCCGCGATTGCTGTGCCCTTTGCTCGTATGCAATGGACATTTAGTCCAAT 2079
Query 76882 TCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTT--TCA-ATGTGTCATAGATGCCCTC 76938
|| || || || || |||| |||||| | | || |||| | | || || ||
Sbjct 2080 GCCACCAGCAGACTTGGAAATTAAAGCACATTGGTGGGCAGATGT---AAATATACCATC 2136
Query 76939 TATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCC 76998
|| |||| | ||| | | || |||||| |||| ||| | || ||| |
Sbjct 2137 AATGGAATCACCAGCCATAGTCAATAGGAAACAGGATGACAATTGCGGTTGGCGAGTGGC 2196
Query 76999 TGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGT 77058
||| ||| | ||| ||||| ||||| ||||| | ||| ||||| | || || ||
Sbjct 2197 AGCAGCAAAGAGTGTTGGAGAGGCATGTGTGAAATAGCGTTCCGAAAGCAAGTTATAAGT 2256
Query 77059 TTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATATG 77118
||||||| | || || ||||| |||||| || | | |||||||| ||||| ||
Sbjct 2257 TTCAATAGCGGCATCAATATCTTCACCATGAATACCAATGGAAACACGCATTAACATGTG 2316
Query 77119 CTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTT 77178
||| || ||||| ||| | || ||| | || | || || || || | |||||
Sbjct 2317 CTGCGGACGTTCAACAATTTTGCCATTCAACTTGAGTAAATAGGAACGCTCAAGTGTTTT 2376
Query 77179 AAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACCGAATTTA 77231
||||||||||| ||||| ||| || | || || || ||| |||||||||
Sbjct 2377 GAAACCAAAATAATTGTAACCAAAATCACGGTCATATATTATAGCCGAATTTA 2429
>seq22
Length=933496
Score = 233 bits (258), Expect = 3e-56
Identities = 476/701 (68%), Gaps = 7/701 (1%)
Strand=Plus/Minus
Query 46464 ATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGTTTGAC 46523
|||||| || ||||| ||||| ||| | || |||||||| || || | || ||
Sbjct 329799 ATCTGCCACAAATTCAATATAATCAGACATTAGTTGGCAATTCATGCCAATCAAATTCAC 329740
Query 46524 CGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTAT--CGAT 46581
|||| || || || | || ||||||||||| | ||||| || | || || | ||
Sbjct 329739 AGGTAAGGCATCAGTTAAGAATTCTTGTTCAATTTTAACAGCTTCAGCAATGATTTCAAT 329680
Query 46582 GTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCAAAATCA 46641
||| || ||| |||||| || || | |||| ||||| | || ||||||||
Sbjct 329679 AATACGGTC-CCT-ACTTGGCTTCTGAATGAGGTGTTGGAACATCAGGCAAGCAAAATCG 329622
Query 46642 CAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGT 46701
||||| | ||||| || || ||||| || ||||| ||||| | |||||||||||
Sbjct 329621 CAATGTAATCCTTCGTCCCTTGAAATTAGCTCATTAGAGAATGTCAAACCAGGCATTAGG 329562
Query 46702 CCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACA 46761
|| || || || |||||||| || | || ||| ||| |||||| |||||||| ||
Sbjct 329561 CCCCGTTTCTTCAGCCAAAAGATTGAAGCAAAACTGCCACTAAAGAAAATGCCTTCAACC 329502
Query 46762 GCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGC--ATCATTATG-AATCCACCTTTGA 46818
|| || ||||| | | | || || | |||| || ||| ||||||| |
Sbjct 329501 GCGGCAAATGCTATTATACGTTCGCCAAAGTTGGCCGATTTCGATGAAATCCACGCCAGT 329442
Query 46819 GCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGttt 46878
|||||||||||||| ||| ||| |||||| || || |||||||| || | | |
Sbjct 329441 GCCCAATCAGCCTTGCGCTTAACAGCAGGCATCGTCTCAATAGCATTGAACAAGTAATCC 329382
Query 46879 ttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATG 46938
||| | | ||| |||| ||||||||| ||||| | || |||||||| ||||| |
Sbjct 329381 CTTTGCTTGCCATCCTTAATATATGTATCAATTAATATGCTGTACATTTCAGAATGCACA 329322
Query 46939 TTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTA 46998
|| || || || || |||||||| || || || | || || || || || || |||
Sbjct 329321 TTCTCCATGGCGATTTGAAATCCATAGAAGCAACGCGCCTCTGTGATTTGAACTTCTTGG 329262
Query 46999 CAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAAT 47058
| || |||||| || || |||||||| || ||||| || ||||| ||||||||
Sbjct 329261 CTGAAGCGTTCAACTAAGTTTTCATTCACAATACCATCGGAGGCGGCAAAGAATGCCAAA 329202
Query 47059 ACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTT 47118
|| || ||| |||| ||||| | || || ||| |||| ||||||||
Sbjct 329201 ACGTGCGAAATGAAATGGCGTTCATTGTCGGTGAGACGCGCCCAATCATCCATATCTTTG 329142
Query 47119 GATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGC 47159
|| | || || ||||| | |||||||| || || |||||
Sbjct 329141 GAAAGGTCAACCTCTTCCACCGTCCAGAAGGATGCTTCTGC 329101
>seq59797
Length=1646
Score = 111 bits (122), Expect = 2e-19
Identities = 188/272 (69%), Gaps = 3/272 (1%)
Strand=Plus/Minus
Query 46900 TATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAAT 46959
|| ||||| || ||||| || | || || || || || || || ||||| ||
Sbjct 1349 TAGGTATCAATCAAAAGTGAGTAAGTCTCGGAGTGTATATTCTCCATCATAATCTGGAAA 1290
Query 46960 CCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTC 47019
||||| |||||||||||||| | | ||||||||| | | |||| ||| | |||
Sbjct 1289 CCGTAGAAACATCTTGCTTCTGCGAGCTGTACCTCGGAGGAGAATCTTTCGAGTAGGTTC 1230
Query 47020 TCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTT 47079
||||| || || || ||| || || || ||||| |||||||| |||| || | ||
Sbjct 1229 TCATTGACAATACCGTCAGATGCGGCGAAGAATGCTAATACATGACTAATGAAGTGCTTC 1170
Query 47080 TCATC---GGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCA 47136
||||| | | || || | |||||| ||||||| || || | || | ||||||
Sbjct 1169 TCATCCTTGTTTATCTTGTTCTGCCAGTCCGTGATATCCTTCGACAAGTCCATTTCTTCT 1110
Query 47137 GCTGTCCAGAATGACGCCTCTGCTTTTTTATA 47168
|| |||||||| || || |||||||| || ||
Sbjct 1109 GCAGTCCAGAAAGAAGCTTCTGCTTTCTTGTA 1078
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712162024694400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |