Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_031042.1
Length=111325
Score E
Sequences producing significant alignments: (Bits) Value
seq85787 113 3e-20
seq81708 104 2e-17
>seq85787
Length=1013
Score = 113 bits (124), Expect = 3e-20
Identities = 137/187 (73%), Gaps = 0/187 (0%)
Strand=Plus/Plus
Query 110489 ATTACATCGCCTGAGTAAATGTACGACTAATAACGTCGTTCTGTTGTTCACGAGTCAGTG 110548
|||||| || ||| || || ||||| |||| || || ||||| || || ||| || |
Sbjct 588 ATTACAACGACTGGGTGAAAGTACGTGTAATTACATCTTTCTGCTGCTCTTTAGTGAGCG 647
Query 110549 CGTTAAATCGAACAGCGTAGCCAGAGACACGGATAGTTAATTGAGGGTATTTTTCAGGGT 110608
||| || || ||||| |||||||| || ||||| || | || || ||||| || || |
Sbjct 648 AGTTGAAGCGTACAGCATAGCCAGAAACGCGGATGGTCAGCTGCGGATATTTCTCCGGAT 707
Query 110609 GTTTCTGTGCATCCAAAAGCTGATCACGACTTAACACATTGACATTTAGGTGCTGACCAC 110668
||| | |||||||| ||| |||||| | | || ||||| || || || |||||||
Sbjct 708 GTTCCATGGCATCCAACAGCATCTCACGATTCATTACGTTGACGTTCAGATGTTGACCAC 767
Query 110669 CTTCGAT 110675
|||||||
Sbjct 768 CTTCGAT 774
>seq81708
Length=1085
Score = 104 bits (114), Expect = 2e-17
Identities = 129/175 (74%), Gaps = 4/175 (2%)
Strand=Plus/Plus
Query 110503 GTAAATGTACGACTAATAACGTCGTTCTGTTGTTCACGAGTCAGTGCGTTAAATCGAACA 110562
|||||||||||| ||||||| || ||| || || | ||||| |||||||| || ||
Sbjct 251 GTAAATGTACGAGTAATAACATCACGCTGCTGCTCTGGCGTCAGCGCGTTAAAGCGCACG 310
Query 110563 GCGTAGCCAGAGACACGGATAGTTAATTGAGGGTATTTTTCAGGGTGTTTCTGTGCATC- 110621
|| ||||| || || || || || || || || |||||||| || || ||| |||||
Sbjct 311 GCATAGCCGGAAACGCGAATGGTCAACTGTGGATATTTTTCCGGATGGTTCACGGCATCT 370
Query 110622 -CAAAAGCTGATCACGACTTAACACATTGACATTTAGGTGCTGACCACCTTCGAT 110675
| || | | ||||||| | || || || || ||||||||||||||||| ||
Sbjct 371 TCCAACGTT--TCACGACGCAGTACGTTTACGTTCAGGTGCTGACCACCTTCAAT 423
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 355739038852820
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |