Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_031042.1 Length=111325 Score E Sequences producing significant alignments: (Bits) Value seq85787 113 3e-20 seq81708 104 2e-17 >seq85787 Length=1013 Score = 113 bits (124), Expect = 3e-20 Identities = 137/187 (73%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 110489 ATTACATCGCCTGAGTAAATGTACGACTAATAACGTCGTTCTGTTGTTCACGAGTCAGTG 110548 |||||| || ||| || || ||||| |||| || || ||||| || || ||| || | Sbjct 588 ATTACAACGACTGGGTGAAAGTACGTGTAATTACATCTTTCTGCTGCTCTTTAGTGAGCG 647 Query 110549 CGTTAAATCGAACAGCGTAGCCAGAGACACGGATAGTTAATTGAGGGTATTTTTCAGGGT 110608 ||| || || ||||| |||||||| || ||||| || | || || ||||| || || | Sbjct 648 AGTTGAAGCGTACAGCATAGCCAGAAACGCGGATGGTCAGCTGCGGATATTTCTCCGGAT 707 Query 110609 GTTTCTGTGCATCCAAAAGCTGATCACGACTTAACACATTGACATTTAGGTGCTGACCAC 110668 ||| | |||||||| ||| |||||| | | || ||||| || || || ||||||| Sbjct 708 GTTCCATGGCATCCAACAGCATCTCACGATTCATTACGTTGACGTTCAGATGTTGACCAC 767 Query 110669 CTTCGAT 110675 ||||||| Sbjct 768 CTTCGAT 774 >seq81708 Length=1085 Score = 104 bits (114), Expect = 2e-17 Identities = 129/175 (74%), Gaps = 4/175 (2%) Strand=Plus/Plus Query 110503 GTAAATGTACGACTAATAACGTCGTTCTGTTGTTCACGAGTCAGTGCGTTAAATCGAACA 110562 |||||||||||| ||||||| || ||| || || | ||||| |||||||| || || Sbjct 251 GTAAATGTACGAGTAATAACATCACGCTGCTGCTCTGGCGTCAGCGCGTTAAAGCGCACG 310 Query 110563 GCGTAGCCAGAGACACGGATAGTTAATTGAGGGTATTTTTCAGGGTGTTTCTGTGCATC- 110621 || ||||| || || || || || || || || |||||||| || || ||| ||||| Sbjct 311 GCATAGCCGGAAACGCGAATGGTCAACTGTGGATATTTTTCCGGATGGTTCACGGCATCT 370 Query 110622 -CAAAAGCTGATCACGACTTAACACATTGACATTTAGGTGCTGACCACCTTCGAT 110675 | || | | ||||||| | || || || || ||||||||||||||||| || Sbjct 371 TCCAACGTT--TCACGACGCAGTACGTTTACGTTCAGGTGCTGACCACCTTCAAT 423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355739038852820