Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_031047.1 Length=170770 Score E Sequences producing significant alignments: (Bits) Value seq81708 159 4e-34 seq85787 100 3e-16 >seq81708 Length=1085 Score = 159 bits (176), Expect = 4e-34 Identities = 130/158 (82%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 62569 CTGCGTCGTGAAACTCTGGAAGATGCAGTTAAGCATCCGGAAAAATATCCGCAGCTGACC 62628 |||||||||||||| |||||||||| || || ||||||||||||||||| ||| ||||| Sbjct 390 CTGCGTCGTGAAACGTTGGAAGATGCCGTGAACCATCCGGAAAAATATCCACAGTTGACC 331 Query 62629 ATCCGTGTATCCGGTTATGCAGTTCGCTTTAACTCTCTGACTCCGGAACAGCAGCGCGAC 62688 || || || ||||| ||||| || ||||||||| | ||||| || || |||||||| || Sbjct 330 ATTCGCGTTTCCGGCTATGCCGTGCGCTTTAACGCGCTGACGCCAGAGCAGCAGCGTGAT 271 Query 62689 GTTATCGCTCGTACCTTCACCGAGAGTTTGTAATGGCA 62726 ||||| ||||||| || ||||| || |||||| ||| Sbjct 270 GTTATTACTCGTACATTTACCGAAAGCCTGTAATTGCA 233 >seq85787 Length=1013 Score = 100 bits (110), Expect = 3e-16 Identities = 114/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 62574 TCGTGAAACTCTGGAAGATGCAGTTAAGCATCCGGAAAAATATCCGCAGCTGACCATCCG 62633 |||||| | ||| ||||| | | |||||||| ||||||||||||||||||||||| Sbjct 736 TCGTGAGATGCTGTTGGATGCCATGGAACATCCGGAGAAATATCCGCAGCTGACCATCCG 677 Query 62634 TGTATCCGGTTATGCAGTTCGCTTTAACTCTCTGACTCCGGAACAGCAGCGCGACGTTAT 62693 || || || ||||| || ||||| ||||| || ||| || |||||| || || || Sbjct 676 CGTTTCTGGCTATGCTGTACGCTTCAACTCGCTCACTAAAGAGCAGCAGAAAGATGTAAT 617 Query 62694 CGCTCGTACCTTCACCGAGAGTTTGTAATGGCA 62726 | ||||| |||||| || ||||||| ||| Sbjct 616 TACACGTACTTTCACCCAGTCGTTGTAATCGCA 584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545744113236000