Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_031087.1
Length=168272
Score E
Sequences producing significant alignments: (Bits) Value
seq81708 168 7e-37
seq85787 120 3e-22
>seq81708
Length=1085
Score = 168 bits (186), Expect = 7e-37
Identities = 143/176 (81%), Gaps = 0/176 (0%)
Strand=Plus/Plus
Query 60000 TCTGTGAAAGTACGGGCGATAACGTCGCGCTGCTGTTCTGGTGTCAGGGAGTTAAAGCGC 60059
|| || || ||||| | ||||| || |||||||| ||||| ||||| | ||||||||||
Sbjct 248 TCGGTAAATGTACGAGTAATAACATCACGCTGCTGCTCTGGCGTCAGCGCGTTAAAGCGC 307
Query 60060 ACCGCGTAGCCGGAAACACGAATGGTAAGCTGCGGGTATTTTTCCGGATGCTCAACCGCG 60119
|| || ||||||||||| |||||||| | ||| || |||||||||||||| | || ||
Sbjct 308 ACGGCATAGCCGGAAACGCGAATGGTCAACTGTGGATATTTTTCCGGATGGTTCACGGCA 367
Query 60120 TCCAGCAGAGTTTCGCGACGCAGCACGTTAACGTTCAGGTGCTGACCGCCTTCAAT 60175
|| || ||||| |||||||| ||||| ||||||||||||||||| ||||||||
Sbjct 368 TCTTCCAACGTTTCACGACGCAGTACGTTTACGTTCAGGTGCTGACCACCTTCAAT 423
>seq85787
Length=1013
Score = 120 bits (132), Expect = 3e-22
Identities = 143/194 (74%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 59985 TGCCATTATAGTGCCTCTGTGAAAGTACGGGCGATAACGTCGCGCTGCTGTTCTGGTGTC 60044
||| |||| | | || ||||||||||| | || || || |||||| ||| ||
Sbjct 584 TGCGATTACAACGACTGGGTGAAAGTACGTGTAATTACATCTTTCTGCTGCTCTTTAGTG 643
Query 60045 AGGGAGTTAAAGCGCACCGCGTAGCCGGAAACACGAATGGTAAGCTGCGGGTATTTTTCC 60104
|| ||||| ||||| || || ||||| ||||| || ||||| |||||||| ||||| |||
Sbjct 644 AGCGAGTTGAAGCGTACAGCATAGCCAGAAACGCGGATGGTCAGCTGCGGATATTTCTCC 703
Query 60105 GGATGCTCAACCGCGTCCAGCAGAGTTTCGCGACGCAGCACGTTAACGTTCAGGTGCTGA 60164
||||| || | || |||| ||| | || ||| || ||||| |||||||| || |||
Sbjct 704 GGATGTTCCATGGCATCCAACAGCATCTCACGATTCATTACGTTGACGTTCAGATGTTGA 763
Query 60165 CCGCCTTCAATTTT 60178
|| ||||| || ||
Sbjct 764 CCACCTTCGATGTT 777
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 537759173302400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |