Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_031090.1 Length=169621 Score E Sequences producing significant alignments: (Bits) Value seq81708 192 6e-44 seq85787 104 3e-17 >seq81708 Length=1085 Score = 192 bits (212), Expect = 6e-44 Identities = 153/184 (83%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 142541 GGTGGTCAACACCTGAACGTTAATGTTCTGCGTCGTGAAACTCTGGAAGATGCAGTTAAG 142600 |||||||| ||||||||||| || || |||||||||||||| |||||||||| || || Sbjct 417 GGTGGTCAGCACCTGAACGTAAACGTACTGCGTCGTGAAACGTTGGAAGATGCCGTGAAC 358 Query 142601 CATCCAGAAAAATATCCGCAGTTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAAC 142660 ||||| ||||||||||| ||||||||||| || || ||||| ||||| || ||||||||| Sbjct 357 CATCCGGAAAAATATCCACAGTTGACCATTCGCGTTTCCGGCTATGCCGTGCGCTTTAAC 298 Query 142661 TCTCTGACTCCGGAACAGCAGCGTGACGTTATCGCTCGTACCTTTACTGAGAGTCTATAA 142720 | ||||| || || ||||||||||| ||||| ||||||| ||||| || || || ||| Sbjct 297 GCGCTGACGCCAGAGCAGCAGCGTGATGTTATTACTCGTACATTTACCGAAAGCCTGTAA 238 Query 142721 TGGC 142724 | || Sbjct 237 TTGC 234 >seq85787 Length=1013 Score = 104 bits (114), Expect = 3e-17 Identities = 123/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 142541 GGTGGTCAACACCTGAACGTTAATGTTCTGCGTCGTGAAACTCTGGAAGATGCAGTTAAG 142600 ||||||||||| |||||||| || || || |||||| | ||| ||||| | | Sbjct 768 GGTGGTCAACATCTGAACGTCAACGTAATGAATCGTGAGATGCTGTTGGATGCCATGGAA 709 Query 142601 CATCCAGAAAAATATCCGCAGTTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAAC 142660 ||||| || |||||||||||| |||||||||| || || || ||||| || ||||| ||| Sbjct 708 CATCCGGAGAAATATCCGCAGCTGACCATCCGCGTTTCTGGCTATGCTGTACGCTTCAAC 649 Query 142661 TCTCTGACTCCGGAACAGCAGCGTGACGTTATCGCTCGTACCTTTAC 142707 || || ||| || |||||| || || || | ||||| || || Sbjct 648 TCGCTCACTAAAGAGCAGCAGAAAGATGTAATTACACGTACTTTCAC 602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542071296589200