Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_031090.1
Length=169621
Score E
Sequences producing significant alignments: (Bits) Value
seq81708 192 6e-44
seq85787 104 3e-17
>seq81708
Length=1085
Score = 192 bits (212), Expect = 6e-44
Identities = 153/184 (83%), Gaps = 0/184 (0%)
Strand=Plus/Minus
Query 142541 GGTGGTCAACACCTGAACGTTAATGTTCTGCGTCGTGAAACTCTGGAAGATGCAGTTAAG 142600
|||||||| ||||||||||| || || |||||||||||||| |||||||||| || ||
Sbjct 417 GGTGGTCAGCACCTGAACGTAAACGTACTGCGTCGTGAAACGTTGGAAGATGCCGTGAAC 358
Query 142601 CATCCAGAAAAATATCCGCAGTTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAAC 142660
||||| ||||||||||| ||||||||||| || || ||||| ||||| || |||||||||
Sbjct 357 CATCCGGAAAAATATCCACAGTTGACCATTCGCGTTTCCGGCTATGCCGTGCGCTTTAAC 298
Query 142661 TCTCTGACTCCGGAACAGCAGCGTGACGTTATCGCTCGTACCTTTACTGAGAGTCTATAA 142720
| ||||| || || ||||||||||| ||||| ||||||| ||||| || || || |||
Sbjct 297 GCGCTGACGCCAGAGCAGCAGCGTGATGTTATTACTCGTACATTTACCGAAAGCCTGTAA 238
Query 142721 TGGC 142724
| ||
Sbjct 237 TTGC 234
>seq85787
Length=1013
Score = 104 bits (114), Expect = 3e-17
Identities = 123/167 (74%), Gaps = 0/167 (0%)
Strand=Plus/Minus
Query 142541 GGTGGTCAACACCTGAACGTTAATGTTCTGCGTCGTGAAACTCTGGAAGATGCAGTTAAG 142600
||||||||||| |||||||| || || || |||||| | ||| ||||| | |
Sbjct 768 GGTGGTCAACATCTGAACGTCAACGTAATGAATCGTGAGATGCTGTTGGATGCCATGGAA 709
Query 142601 CATCCAGAAAAATATCCGCAGTTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAAC 142660
||||| || |||||||||||| |||||||||| || || || ||||| || ||||| |||
Sbjct 708 CATCCGGAGAAATATCCGCAGCTGACCATCCGCGTTTCTGGCTATGCTGTACGCTTCAAC 649
Query 142661 TCTCTGACTCCGGAACAGCAGCGTGACGTTATCGCTCGTACCTTTAC 142707
|| || ||| || |||||| || || || | ||||| || ||
Sbjct 648 TCGCTCACTAAAGAGCAGCAGAAAGATGTAATTACACGTACTTTCAC 602
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 542071296589200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |