Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_031095.1 Length=168758 Score E Sequences producing significant alignments: (Bits) Value seq81708 159 4e-34 seq85787 111 2e-19 >seq81708 Length=1085 Score = 159 bits (176), Expect = 4e-34 Identities = 141/176 (80%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 47302 ATTGAAGGCGGTCAGCACCTGAACGTTAACGTGTTGCGTCGCGAAACCTTGCTGGATGCG 47361 |||||||| ||||||||||||||||| ||||| ||||||| ||||| ||| ||||| Sbjct 423 ATTGAAGGTGGTCAGCACCTGAACGTAAACGTACTGCGTCGTGAAACGTTGGAAGATGCC 364 Query 47362 GTTGAGCACCCAGAAAAATACCCGCAGCTGACTATTCGCGTTTCCGGATACGCGGTGCGC 47421 || | || || |||||||| || ||| |||| |||||||||||||| || || |||||| Sbjct 363 GTGAACCATCCGGAAAAATATCCACAGTTGACCATTCGCGTTTCCGGCTATGCCGTGCGC 304 Query 47422 TTCAACTCCTTGACACCAGAACAGCAGCGCGACGTTATCGCTCGTACTTTCACAGA 47477 || ||| | |||| ||||| |||||||| || ||||| ||||||| || || || Sbjct 303 TTTAACGCGCTGACGCCAGAGCAGCAGCGTGATGTTATTACTCGTACATTTACCGA 248 >seq85787 Length=1013 Score = 111 bits (122), Expect = 2e-19 Identities = 130/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 47299 AAAATTGAAGGCGGTCAGCACCTGAACGTTAACGTGTTGCGTCGCGAAACCTTGCTGGAT 47358 || || ||||| ||||| || |||||||| ||||| || ||| || | || ||||| Sbjct 777 AACATCGAAGGTGGTCAACATCTGAACGTCAACGTAATGAATCGTGAGATGCTGTTGGAT 718 Query 47359 GCGGTTGAGCACCCAGAAAAATACCCGCAGCTGACTATTCGCGTTTCCGGATACGCGGTG 47418 || | || || || || ||||| ||||||||||| || |||||||| || || || || Sbjct 717 GCCATGGAACATCCGGAGAAATATCCGCAGCTGACCATCCGCGTTTCTGGCTATGCTGTA 658 Query 47419 CGCTTCAACTCCTTGACACCAGAACAGCAGCGCGACGTTATCGCTCGTACTTTCAC 47474 ||||||||||| | || ||| |||||| || || || | ||||||||||| Sbjct 657 CGCTTCAACTCGCTCACTAAAGAGCAGCAGAAAGATGTAATTACACGTACTTTCAC 602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 539312688437600