Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_031129.1 Length=103445 Score E Sequences producing significant alignments: (Bits) Value seq42150 556 8e-154 seq16149 100 2e-16 >seq42150 Length=2645 Score = 556 bits (616), Expect = 8e-154 Identities = 802/1126 (71%), Gaps = 4/1126 (0%) Strand=Plus/Plus Query 5362 CTGACTGAACAAGTACAGTTGCAAAAGGATGAGCTACACGCGAACGAGTTTTACCAGGTC 5421 ||||| ||||| | ||| ||||| || ||| | | | ||| |||||| ||||| Sbjct 501 CTGACCGAACAGATTCAGGCACAAAAAGAAGAGTTGCGTGAAAACACGTTTTATCAGGTT 560 Query 5422 TATGCGAAAGCGGCACTGGCAAAATTGCCTCTACTGACTCGTGCGAACGTTGACTATGCC 5481 || ||||||||||| | || ||| ||||| | |||| ||||||| |||||| ||||| Sbjct 561 TACGCGAAAGCGGCGTTAGCCAAACTGCCTAAATTGACGCGTGCGAGCGTTGATTATGCG 620 Query 5482 GTAAGTGAAATGGAAGAAAAGGGTTATGTTTTCGATAAACGCCCTGCTGGCTCTTCAATG 5541 || | ||||||||||||||| || ||| |||||||||||| | || || || | Sbjct 621 GTGAATGAAATGGAAGAAAACGGCTATCCATTCGATAAACGCGCGGCGGGAAGCTCTACC 680 Query 5542 AAATATGCGATGTCAATTCAGAACATCATTGACATATATGAACATCGCGGAGTGCCAAAA 5601 || ||||||||||| ||||| |||||||| ||||| ||| | |||||||| || || ||| Sbjct 681 AAGTATGCGATGTCGATTCAAAACATCATCGACATCTATCATCATCGCGGCGTACCCAAA 740 Query 5602 TACCGGGATCGCTACAGCGAAGCGTATGTGATTTTCATCTCTAATCTTAAAGGCGGTGTG 5661 || || ||||| || |||||||| || || | ||| || |||||||| ||| Sbjct 741 TATCGCGATCGTCACGTCGAAGCGTTCACAATGTTTGTGGGTAACCTGAAAGGCGGCGTG 800 Query 5662 TCAAAAACTGTATCGACGGTTTCTCTGGCGCATGCAATGCGTGCTCACCCTCATCTTCTG 5721 || ||||| ||||| || || || || || ||||| ||||||| || || ||| | ||| Sbjct 801 TCGAAAACGGTATCCACTGTCTCGCTTGCCCATGCTTTGCGTGCGCATCCCCATTTGCTG 860 Query 5722 ATGGAAGATTTAAGGATTCTGGTTATTGACCTTGATCCGCAATCTTCAGCAACGATGTTT 5781 | |||||||| | |||||||| || || ||||| |||||||||||||| || ||||| Sbjct 861 TTTGAAGATTTGCGTATTCTGGTCATCGATCTTGACCCGCAATCTTCAGCCACCATGTTC 920 Query 5782 TTAAGCCATAAACACTCTATTGGTATCGTAAACGCAACATCTGCACAGGCTATGTTGCAG 5841 | | ||| | | || | || | || | || ||| | || ||||||||| |||| Sbjct 921 CTGAATCATCAGCGTTCAGTGGGATTAGTGGAAGCGACAGCCGCCCAGGCTATGCTGCAA 980 Query 5842 AATGTAAGCCGTGAAGAGCTGTTAGAGGAGTTTATTGTTCCTTCTGTTGTACCTGGGGTT 5901 || || ||||||||||||||| | | |||||||| ||| | || || | || || || Sbjct 981 AACGTCAGCCGTGAAGAGCTGCTCAATGAGTTTATCGTTTCGTCGATTATTCCCGGCGTC 1040 Query 5902 GACGTTATGCCTGCGTCGATTGACGATGCCTTTATTGCATC-CGATTGGAGAGAGCTGTG 5960 || || |||| || |||||||| || ||||||||||| || || | ||| |||||| || Sbjct 1041 GATGTGCTGCCGGCTTCGATTGATGACGCCTTTATTGCCTCGCGCTGGGA-AGAGCTTTG 1099 Query 5961 CAATGAGCATCTACCGGGTCAGAACATCCATGCAGTCCTGAAAGAAAATGTGATTGATAA 6020 || || | |||| ||||| || || || |||||| | ||||||||| | | || Sbjct 1100 TGCTGCCCACTTGCCGGAGCAGAATATTCACGCGGTCCTGTATGAAAATGTGGTGGCCAA 1159 Query 6021 GCTGAAGAGCGATTATGACTTTATCCTCGTTGATAGTGGTCCTCACCTTGACGCCTTCCT 6080 |||||||| ||||||||||| ||| | | || || || || || || || |||||||| Sbjct 1160 GCTGAAGAAAGATTATGACTTCATCTTTATCGACAGCGGCCCACATCTGGATGCCTTCCT 1219 Query 6081 GAAAAATGCTTTGGCCTCGGCCAATATACTGTTTACACCTCTGCCGCCTGCAACGGTTGA 6140 ||| || || | ||| | | | | ||| | || || |||| || || ||| || Sbjct 1220 GAAGAACGCCATTGCCGCTTCAGACCTGCTGATGACGCCGGTGCCCCCCGCGCAGGTGGA 1279 Query 6141 TTTCCACTCATCGCTTAAATACGTTGCCCGCCTTCCTGAGTTGGTGAAACTCATTTCGGA 6200 ||||||||| || | || || | | || | || ||| || | ||||| || Sbjct 1280 TTTCCACTCCACGTTAAAGTATCTGACGCGTTTGCCGGAGCTGATTGGCATCATTGAAGA 1339 Query 6201 TGAAGGCTGCGAGTGTCAGCTTGCA-ACTAACATTGGTTTTATGTCCAAGTTGAGTAACA 6259 |||| | || | |||| || || || ||||||||||| ||| | ||| | Sbjct 1340 GTCAGGCGCAGCCTG-CCGCTTACAGGGCAATATCGGTTTTATGTCAAAGCTCTCTAATA 1398 Query 6260 AGGCAGACCATAAGTATTGCCATAGCCTGGCTAAAGAAGTGTTCGGTGGGGATATGCTTG 6319 | || ||||| || ||||| |||||||| ||||| | || || || |||||||| | Sbjct 1399 AAGCCGACCACAAACTGTGCCACAGCCTGGCAAAAGAGATTTTTGGCGGCGATATGCTGG 1458 Query 6320 ATGTTGTCCTCCCTCGCCTTGACGGTTTTGAACGCTGCGGCGAGTCTTTTGACACTGTTA 6379 ||| || | || || || || || ||||| ||||| || ||||| |||||||| || | Sbjct 1459 ATGCTGCGTTACCGCGTCTGGATGGCTTTGAGCGCTGTGGTGAGTCGTTTGACACGGTAA 1518 Query 6380 TTTCAGCTAACCCGGCAACGTATGTTGGTAGTGCTGATGCATTGAAGAACGCGCGAATTG 6439 | || || || || |||| ||||| || || | || || || || || ||||| | Sbjct 1519 TCTCTGCCAATCCCTCAACCTATGTGGGCAGCACCGAGGCCTTAAAAAATGCGCGTTCAG 1578 Query 6440 CTGCGGAAGATTTTGCTAAAGCAGTTTTTGACCGTATTGAATTTAT 6485 | ||||| ||||| || ||||| || ||||| ||||||||||| || Sbjct 1579 CGGCGGAGGATTTCGCCAAAGCCGTATTTGATCGTATTGAATTCAT 1624 >seq16149 Length=12179 Score = 100 bits (110), Expect = 2e-16 Identities = 289/438 (66%), Gaps = 10/438 (2%) Strand=Plus/Plus Query 102849 TTCACTGGTCAACAGGAAGAAATCTGCGTCCAGTCGCTGCGCAACATCTTCACTATCAAT 102908 ||| ||||||| ||| | || || || || | ||||| |||| |||||| | ||||| Sbjct 594 TTCGCTGGTCATCAGAATAAAGTCCGCATCAAAGCGCTGTGCAAAATCTTCGCGGTCAAT 653 Query 102909 ATCAGAATTCTGCTCAAGCAATTCATCCGCAAATTT--GACGCTGGTAAGGCTGAAG--T 102964 ||| ||||| || ||| || || || |||||| | | ||||| | Sbjct 654 ATCGTCGTTCTGGTCGCGCAGCGTGTCGCTGAACTTCAGACGCT--TCA--CTGAACCAT 709 Query 102965 TATGGTCCAGTGTAAATTTAATGCGGTTCTGCCAGTCGAGTGCCAACTTAGTGACGAGCT 103024 || | |||| || | |||||| | |||||||||||| |||| || || || |||| Sbjct 710 CATCGGCCAGCACGAACTGAATGCGCTCCTGCCAGTCGAGCGCCAGTTTGGTTACCAGCT 769 Query 103025 TGCCAGCTTCCAGGTGTGTGGATATTTCATCACTTCCCAAGTCCTGCTTTTTCACTCGGG 103084 | || ||||| | ||| ||| || ||||| | ||| ||||| || || ||| Sbjct 770 TACCCGCTTCGATGTGGTTGGCGATCTCATCGCACACCAGATCCTGTTTCTTGCAGCGGA 829 Query 103085 CAATACCGCCATCCTCAAGCACTGCCTTAAGTTCTGCCGCATCCCCCATTTGAAATCCCT 103144 || |||||||| || |||| || || || || || ||||| || ||||| Sbjct 830 TAACGCCGCCATCTTCCAGCAGCGCTTTCAGCTCCGCTTCATCCATCAGGGCGAATCCGG 889 Query 103145 GTGG-AGCACTACCATCACGTACCCAGTCGGTCAGCGTTAATTCAATGGGATTTTCAACA 103203 || ||| | || ||||||||| || ||||| || | |||||| || |||| | Sbjct 890 CAGGCAGCTC-GCCTGAACGTACCCATTCTGTCAGGGTCAGTTCAATCGGGCTTTCCAGC 948 Query 103204 CTCAGGGGAACAACAGGAAGAGAACCCAGAGACTTACGCATAAGCGCGAGCATATCCTCT 103263 |||| || || || || || || ||||| ||||||| ||||| || |||| || Sbjct 949 GTCAGCGGCACCACCGGCAGTGAGCCCAGGCTTTTACGCAGCAGCGCCAGGGTATCTTCC 1008 Query 103264 GCCTGCCGCGCGCTGGCA 103281 || | ||||||||| Sbjct 1009 GCTTTTTTAGCGCTGGCA 1026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 330549674277220