Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_031129.1
Length=103445
Score E
Sequences producing significant alignments: (Bits) Value
seq42150 556 8e-154
seq16149 100 2e-16
>seq42150
Length=2645
Score = 556 bits (616), Expect = 8e-154
Identities = 802/1126 (71%), Gaps = 4/1126 (0%)
Strand=Plus/Plus
Query 5362 CTGACTGAACAAGTACAGTTGCAAAAGGATGAGCTACACGCGAACGAGTTTTACCAGGTC 5421
||||| ||||| | ||| ||||| || ||| | | | ||| |||||| |||||
Sbjct 501 CTGACCGAACAGATTCAGGCACAAAAAGAAGAGTTGCGTGAAAACACGTTTTATCAGGTT 560
Query 5422 TATGCGAAAGCGGCACTGGCAAAATTGCCTCTACTGACTCGTGCGAACGTTGACTATGCC 5481
|| ||||||||||| | || ||| ||||| | |||| ||||||| |||||| |||||
Sbjct 561 TACGCGAAAGCGGCGTTAGCCAAACTGCCTAAATTGACGCGTGCGAGCGTTGATTATGCG 620
Query 5482 GTAAGTGAAATGGAAGAAAAGGGTTATGTTTTCGATAAACGCCCTGCTGGCTCTTCAATG 5541
|| | ||||||||||||||| || ||| |||||||||||| | || || || |
Sbjct 621 GTGAATGAAATGGAAGAAAACGGCTATCCATTCGATAAACGCGCGGCGGGAAGCTCTACC 680
Query 5542 AAATATGCGATGTCAATTCAGAACATCATTGACATATATGAACATCGCGGAGTGCCAAAA 5601
|| ||||||||||| ||||| |||||||| ||||| ||| | |||||||| || || |||
Sbjct 681 AAGTATGCGATGTCGATTCAAAACATCATCGACATCTATCATCATCGCGGCGTACCCAAA 740
Query 5602 TACCGGGATCGCTACAGCGAAGCGTATGTGATTTTCATCTCTAATCTTAAAGGCGGTGTG 5661
|| || ||||| || |||||||| || || | ||| || |||||||| |||
Sbjct 741 TATCGCGATCGTCACGTCGAAGCGTTCACAATGTTTGTGGGTAACCTGAAAGGCGGCGTG 800
Query 5662 TCAAAAACTGTATCGACGGTTTCTCTGGCGCATGCAATGCGTGCTCACCCTCATCTTCTG 5721
|| ||||| ||||| || || || || || ||||| ||||||| || || ||| | |||
Sbjct 801 TCGAAAACGGTATCCACTGTCTCGCTTGCCCATGCTTTGCGTGCGCATCCCCATTTGCTG 860
Query 5722 ATGGAAGATTTAAGGATTCTGGTTATTGACCTTGATCCGCAATCTTCAGCAACGATGTTT 5781
| |||||||| | |||||||| || || ||||| |||||||||||||| || |||||
Sbjct 861 TTTGAAGATTTGCGTATTCTGGTCATCGATCTTGACCCGCAATCTTCAGCCACCATGTTC 920
Query 5782 TTAAGCCATAAACACTCTATTGGTATCGTAAACGCAACATCTGCACAGGCTATGTTGCAG 5841
| | ||| | | || | || | || | || ||| | || ||||||||| ||||
Sbjct 921 CTGAATCATCAGCGTTCAGTGGGATTAGTGGAAGCGACAGCCGCCCAGGCTATGCTGCAA 980
Query 5842 AATGTAAGCCGTGAAGAGCTGTTAGAGGAGTTTATTGTTCCTTCTGTTGTACCTGGGGTT 5901
|| || ||||||||||||||| | | |||||||| ||| | || || | || || ||
Sbjct 981 AACGTCAGCCGTGAAGAGCTGCTCAATGAGTTTATCGTTTCGTCGATTATTCCCGGCGTC 1040
Query 5902 GACGTTATGCCTGCGTCGATTGACGATGCCTTTATTGCATC-CGATTGGAGAGAGCTGTG 5960
|| || |||| || |||||||| || ||||||||||| || || | ||| |||||| ||
Sbjct 1041 GATGTGCTGCCGGCTTCGATTGATGACGCCTTTATTGCCTCGCGCTGGGA-AGAGCTTTG 1099
Query 5961 CAATGAGCATCTACCGGGTCAGAACATCCATGCAGTCCTGAAAGAAAATGTGATTGATAA 6020
|| || | |||| ||||| || || || |||||| | ||||||||| | | ||
Sbjct 1100 TGCTGCCCACTTGCCGGAGCAGAATATTCACGCGGTCCTGTATGAAAATGTGGTGGCCAA 1159
Query 6021 GCTGAAGAGCGATTATGACTTTATCCTCGTTGATAGTGGTCCTCACCTTGACGCCTTCCT 6080
|||||||| ||||||||||| ||| | | || || || || || || || ||||||||
Sbjct 1160 GCTGAAGAAAGATTATGACTTCATCTTTATCGACAGCGGCCCACATCTGGATGCCTTCCT 1219
Query 6081 GAAAAATGCTTTGGCCTCGGCCAATATACTGTTTACACCTCTGCCGCCTGCAACGGTTGA 6140
||| || || | ||| | | | | ||| | || || |||| || || ||| ||
Sbjct 1220 GAAGAACGCCATTGCCGCTTCAGACCTGCTGATGACGCCGGTGCCCCCCGCGCAGGTGGA 1279
Query 6141 TTTCCACTCATCGCTTAAATACGTTGCCCGCCTTCCTGAGTTGGTGAAACTCATTTCGGA 6200
||||||||| || | || || | | || | || ||| || | ||||| ||
Sbjct 1280 TTTCCACTCCACGTTAAAGTATCTGACGCGTTTGCCGGAGCTGATTGGCATCATTGAAGA 1339
Query 6201 TGAAGGCTGCGAGTGTCAGCTTGCA-ACTAACATTGGTTTTATGTCCAAGTTGAGTAACA 6259
|||| | || | |||| || || || ||||||||||| ||| | ||| |
Sbjct 1340 GTCAGGCGCAGCCTG-CCGCTTACAGGGCAATATCGGTTTTATGTCAAAGCTCTCTAATA 1398
Query 6260 AGGCAGACCATAAGTATTGCCATAGCCTGGCTAAAGAAGTGTTCGGTGGGGATATGCTTG 6319
| || ||||| || ||||| |||||||| ||||| | || || || |||||||| |
Sbjct 1399 AAGCCGACCACAAACTGTGCCACAGCCTGGCAAAAGAGATTTTTGGCGGCGATATGCTGG 1458
Query 6320 ATGTTGTCCTCCCTCGCCTTGACGGTTTTGAACGCTGCGGCGAGTCTTTTGACACTGTTA 6379
||| || | || || || || || ||||| ||||| || ||||| |||||||| || |
Sbjct 1459 ATGCTGCGTTACCGCGTCTGGATGGCTTTGAGCGCTGTGGTGAGTCGTTTGACACGGTAA 1518
Query 6380 TTTCAGCTAACCCGGCAACGTATGTTGGTAGTGCTGATGCATTGAAGAACGCGCGAATTG 6439
| || || || || |||| ||||| || || | || || || || || ||||| |
Sbjct 1519 TCTCTGCCAATCCCTCAACCTATGTGGGCAGCACCGAGGCCTTAAAAAATGCGCGTTCAG 1578
Query 6440 CTGCGGAAGATTTTGCTAAAGCAGTTTTTGACCGTATTGAATTTAT 6485
| ||||| ||||| || ||||| || ||||| ||||||||||| ||
Sbjct 1579 CGGCGGAGGATTTCGCCAAAGCCGTATTTGATCGTATTGAATTCAT 1624
>seq16149
Length=12179
Score = 100 bits (110), Expect = 2e-16
Identities = 289/438 (66%), Gaps = 10/438 (2%)
Strand=Plus/Plus
Query 102849 TTCACTGGTCAACAGGAAGAAATCTGCGTCCAGTCGCTGCGCAACATCTTCACTATCAAT 102908
||| ||||||| ||| | || || || || | ||||| |||| |||||| | |||||
Sbjct 594 TTCGCTGGTCATCAGAATAAAGTCCGCATCAAAGCGCTGTGCAAAATCTTCGCGGTCAAT 653
Query 102909 ATCAGAATTCTGCTCAAGCAATTCATCCGCAAATTT--GACGCTGGTAAGGCTGAAG--T 102964
||| ||||| || ||| || || || |||||| | | ||||| |
Sbjct 654 ATCGTCGTTCTGGTCGCGCAGCGTGTCGCTGAACTTCAGACGCT--TCA--CTGAACCAT 709
Query 102965 TATGGTCCAGTGTAAATTTAATGCGGTTCTGCCAGTCGAGTGCCAACTTAGTGACGAGCT 103024
|| | |||| || | |||||| | |||||||||||| |||| || || || ||||
Sbjct 710 CATCGGCCAGCACGAACTGAATGCGCTCCTGCCAGTCGAGCGCCAGTTTGGTTACCAGCT 769
Query 103025 TGCCAGCTTCCAGGTGTGTGGATATTTCATCACTTCCCAAGTCCTGCTTTTTCACTCGGG 103084
| || ||||| | ||| ||| || ||||| | ||| ||||| || || |||
Sbjct 770 TACCCGCTTCGATGTGGTTGGCGATCTCATCGCACACCAGATCCTGTTTCTTGCAGCGGA 829
Query 103085 CAATACCGCCATCCTCAAGCACTGCCTTAAGTTCTGCCGCATCCCCCATTTGAAATCCCT 103144
|| |||||||| || |||| || || || || || ||||| || |||||
Sbjct 830 TAACGCCGCCATCTTCCAGCAGCGCTTTCAGCTCCGCTTCATCCATCAGGGCGAATCCGG 889
Query 103145 GTGG-AGCACTACCATCACGTACCCAGTCGGTCAGCGTTAATTCAATGGGATTTTCAACA 103203
|| ||| | || ||||||||| || ||||| || | |||||| || |||| |
Sbjct 890 CAGGCAGCTC-GCCTGAACGTACCCATTCTGTCAGGGTCAGTTCAATCGGGCTTTCCAGC 948
Query 103204 CTCAGGGGAACAACAGGAAGAGAACCCAGAGACTTACGCATAAGCGCGAGCATATCCTCT 103263
|||| || || || || || || ||||| ||||||| ||||| || |||| ||
Sbjct 949 GTCAGCGGCACCACCGGCAGTGAGCCCAGGCTTTTACGCAGCAGCGCCAGGGTATCTTCC 1008
Query 103264 GCCTGCCGCGCGCTGGCA 103281
|| | |||||||||
Sbjct 1009 GCTTTTTTAGCGCTGGCA 1026
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 330549674277220
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |