Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_031761.1
Length=131855
Score E
Sequences producing significant alignments: (Bits) Value
seq280 114 1e-20
seq21746 95.1 1e-14
seq322 84.2 2e-11
>seq280
Length=341618
Score = 114 bits (126), Expect = 1e-20
Identities = 167/236 (71%), Gaps = 0/236 (0%)
Strand=Plus/Minus
Query 111093 TTTAAAAATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGA 111152
|| |||||||||||| || || || || ||||| ||||| ||||| || |||| ||
Sbjct 106714 TTCAAAAATGCAAATCTTCGTGAAGACTTTGACTGGCAAGACCATCACTCTGGAGGTTGA 106655
Query 111153 ACCCAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGT 111212
||| |||| || ||| | |||||| || ||| |||||||| || ||||
Sbjct 106654 ACCATCCGATACTATTGAGAATGTAAAAGCCAAGATTCAAGACAAAGAGGGTATTCCACC 106595
Query 111213 CGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGA 111272
||||| ||| | | || | ||| ||||||||||||||||| || || ||||
Sbjct 106594 AGATCAGCAACGTTTAATCTTTGCCGGCAAACAATTGGAAGACGGACGCACCTTGTCCGA 106535
Query 111273 TTATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111328
||| || || ||||| || |||||||| ||| | || | ||||| || |||||||
Sbjct 106534 TTACAACATCCAAAAGGAGTCTACACTTCATCTGGTTCTTCGTCTACGTGGTGGCA 106479
Score = 114 bits (126), Expect = 1e-20
Identities = 167/236 (71%), Gaps = 0/236 (0%)
Strand=Plus/Minus
Query 111093 TTTAAAAATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGA 111152
|| |||||||||||| || || || || ||||| ||||| ||||| || |||| ||
Sbjct 114960 TTCAAAAATGCAAATCTTCGTGAAGACTTTGACTGGCAAGACCATCACTCTGGAGGTTGA 114901
Query 111153 ACCCAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGT 111212
||| |||| || ||| | |||||| || ||| |||||||| || ||||
Sbjct 114900 ACCATCCGATACTATTGAGAATGTAAAAGCCAAGATTCAAGACAAAGAGGGTATTCCACC 114841
Query 111213 CGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGA 111272
||||| ||| | | || | ||| ||||||||||||||||| || || ||||
Sbjct 114840 AGATCAGCAACGTTTAATCTTTGCCGGCAAACAATTGGAAGACGGACGCACCTTGTCCGA 114781
Query 111273 TTATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111328
||| || || ||||| || |||||||| ||| | || | ||||| || |||||||
Sbjct 114780 TTACAACATCCAAAAGGAGTCTACACTTCATCTGGTTCTTCGTCTACGTGGTGGCA 114725
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159
|||||||| ||||| ||||| ||||| ||||||||||| || |||| ||||| |
Sbjct 106251 ATGCAAATATTTGTTAAAACATTGACTGGCAAAACCATCACTCTGGAGGTTGAACCTTCC 106192
Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219
||| || | | | || ||| ||||| || || ||||| | || ||||||
Sbjct 106191 GATACTATCGAAAATGTGAAAGCCAAAATCCAAGATAAGGAAGGTATCCCACCAGATCAA 106132
Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279
|| | | || | || ||||| || | |||||| || || ||||||||||
Sbjct 106131 CAGCGTTTAATCTTCGCCGGCAAGCAGCTCGAAGATGGCCGCACCTTGTCCGATTATAAC 106072
Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326
||||||||||| ||||| || |||||||| ||||||| || |||||
Sbjct 106071 ATACAAAAAGAGTCTACCCTGCATTTAGTCCTGCGTCTCCGTGGTGG 106025
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159
|||||||| ||||| ||||| ||||| ||||||||||| || |||| ||||| |
Sbjct 114497 ATGCAAATATTTGTTAAAACATTGACTGGCAAAACCATCACTCTGGAGGTTGAACCTTCC 114438
Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219
||| || | | | || ||| ||||| || || ||||| | || ||||||
Sbjct 114437 GATACTATCGAAAATGTGAAAGCCAAAATCCAAGATAAGGAAGGTATCCCACCAGATCAA 114378
Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279
|| | | || | || ||||| || | |||||| || || ||||||||||
Sbjct 114377 CAGCGTTTAATCTTCGCCGGCAAGCAGCTCGAAGATGGCCGCACCTTGTCCGATTATAAC 114318
Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326
||||||||||| ||||| || |||||||| ||||||| || |||||
Sbjct 114317 ATACAAAAAGAGTCTACCCTGCATTTAGTCCTGCGTCTCCGTGGTGG 114271
>seq21746
Length=7614
Score = 95.1 bits (104), Expect = 1e-14
Identities = 159/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 111097 AAAATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCC 111156
|||||||| ||||| |||||||| | || ||||| ||||| || |||| || ||
Sbjct 2193 AAAATGCAGATTTTCGTCAAAACACTTACGGGCAAGACCATCACTTTGGAGGTCGAGCCT 2252
Query 111157 AGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGAT 111216
|| || | | | || || ||||| || |||||||| | || |||
Sbjct 2253 TCTGACACTATCGAAAATGTCAAGGCTAAAATCCAAGATAAAGAAGGTATACCACCAGAT 2312
Query 111217 CAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 111276
|||||| | | |||| || ||||| |||||||||||| | ||| || |||| ||
Sbjct 2313 CAACAACGTTTGATTTTCGCCGGCAAGCAATTGGAAGATGGTCGTACTTTGTCCGACTAC 2372
Query 111277 AATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326
|| || ||||| || || || || || || |||||||||||||| |||||
Sbjct 2373 AACATTCAAAAGGAGTCAACCCTCCACTTGGTGTTGCGTCTGCGTGGTGG 2422
>seq322
Length=316913
Score = 84.2 bits (92), Expect = 2e-11
Identities = 146/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159
||||||||||| || || || | || ||||| || ||||| | || || ||
Sbjct 56428 ATGCAAATTTTCGTTAAGACCCTAACGGGCAAGACTATTACTCTTGAGGTTGAGCCTTCG 56369
Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTC-GATCA 111218
||| | ||| || || || |||||| ||||| ||||| | |||| | |||||
Sbjct 56368 GATACAATTGAGCATGTTAAGGCGAAAATTCAAGACAAGGAAGG-GATCCCTCCAGATCA 56310
Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278
||| | || |||| || || || ||||| |||||| ||| | |||||||| ||
Sbjct 56309 ACAGCGCCTAATTTTCGCAGGAAAGCAATTAGAAGATGGGCGAACCTTAGCCGATTACAA 56250
Query 111279 TATACAAAAAGAATCTACACTACATTTAGT 111308
||| ||||| |||||||| ||||||||||
Sbjct 56249 TATTCAAAAGGAATCTACTTTACATTTAGT 56220
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421365644783920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |