Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq280 114 1e-20 seq21746 95.1 1e-14 seq322 84.2 2e-11 >seq280 Length=341618 Score = 114 bits (126), Expect = 1e-20 Identities = 167/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 111093 TTTAAAAATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGA 111152 || |||||||||||| || || || || ||||| ||||| ||||| || |||| || Sbjct 106714 TTCAAAAATGCAAATCTTCGTGAAGACTTTGACTGGCAAGACCATCACTCTGGAGGTTGA 106655 Query 111153 ACCCAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGT 111212 ||| |||| || ||| | |||||| || ||| |||||||| || |||| Sbjct 106654 ACCATCCGATACTATTGAGAATGTAAAAGCCAAGATTCAAGACAAAGAGGGTATTCCACC 106595 Query 111213 CGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGA 111272 ||||| ||| | | || | ||| ||||||||||||||||| || || |||| Sbjct 106594 AGATCAGCAACGTTTAATCTTTGCCGGCAAACAATTGGAAGACGGACGCACCTTGTCCGA 106535 Query 111273 TTATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111328 ||| || || ||||| || |||||||| ||| | || | ||||| || ||||||| Sbjct 106534 TTACAACATCCAAAAGGAGTCTACACTTCATCTGGTTCTTCGTCTACGTGGTGGCA 106479 Score = 114 bits (126), Expect = 1e-20 Identities = 167/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 111093 TTTAAAAATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGA 111152 || |||||||||||| || || || || ||||| ||||| ||||| || |||| || Sbjct 114960 TTCAAAAATGCAAATCTTCGTGAAGACTTTGACTGGCAAGACCATCACTCTGGAGGTTGA 114901 Query 111153 ACCCAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGT 111212 ||| |||| || ||| | |||||| || ||| |||||||| || |||| Sbjct 114900 ACCATCCGATACTATTGAGAATGTAAAAGCCAAGATTCAAGACAAAGAGGGTATTCCACC 114841 Query 111213 CGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGA 111272 ||||| ||| | | || | ||| ||||||||||||||||| || || |||| Sbjct 114840 AGATCAGCAACGTTTAATCTTTGCCGGCAAACAATTGGAAGACGGACGCACCTTGTCCGA 114781 Query 111273 TTATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111328 ||| || || ||||| || |||||||| ||| | || | ||||| || ||||||| Sbjct 114780 TTACAACATCCAAAAGGAGTCTACACTTCATCTGGTTCTTCGTCTACGTGGTGGCA 114725 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||| ||||| ||||| ||||| ||||||||||| || |||| ||||| | Sbjct 106251 ATGCAAATATTTGTTAAAACATTGACTGGCAAAACCATCACTCTGGAGGTTGAACCTTCC 106192 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| || | | | || ||| ||||| || || ||||| | || |||||| Sbjct 106191 GATACTATCGAAAATGTGAAAGCCAAAATCCAAGATAAGGAAGGTATCCCACCAGATCAA 106132 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || | | || | || ||||| || | |||||| || || |||||||||| Sbjct 106131 CAGCGTTTAATCTTCGCCGGCAAGCAGCTCGAAGATGGCCGCACCTTGTCCGATTATAAC 106072 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 ||||||||||| ||||| || |||||||| ||||||| || ||||| Sbjct 106071 ATACAAAAAGAGTCTACCCTGCATTTAGTCCTGCGTCTCCGTGGTGG 106025 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||| ||||| ||||| ||||| ||||||||||| || |||| ||||| | Sbjct 114497 ATGCAAATATTTGTTAAAACATTGACTGGCAAAACCATCACTCTGGAGGTTGAACCTTCC 114438 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| || | | | || ||| ||||| || || ||||| | || |||||| Sbjct 114437 GATACTATCGAAAATGTGAAAGCCAAAATCCAAGATAAGGAAGGTATCCCACCAGATCAA 114378 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || | | || | || ||||| || | |||||| || || |||||||||| Sbjct 114377 CAGCGTTTAATCTTCGCCGGCAAGCAGCTCGAAGATGGCCGCACCTTGTCCGATTATAAC 114318 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 ||||||||||| ||||| || |||||||| ||||||| || ||||| Sbjct 114317 ATACAAAAAGAGTCTACCCTGCATTTAGTCCTGCGTCTCCGTGGTGG 114271 >seq21746 Length=7614 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 111097 AAAATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCC 111156 |||||||| ||||| |||||||| | || ||||| ||||| || |||| || || Sbjct 2193 AAAATGCAGATTTTCGTCAAAACACTTACGGGCAAGACCATCACTTTGGAGGTCGAGCCT 2252 Query 111157 AGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGAT 111216 || || | | | || || ||||| || |||||||| | || ||| Sbjct 2253 TCTGACACTATCGAAAATGTCAAGGCTAAAATCCAAGATAAAGAAGGTATACCACCAGAT 2312 Query 111217 CAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 111276 |||||| | | |||| || ||||| |||||||||||| | ||| || |||| || Sbjct 2313 CAACAACGTTTGATTTTCGCCGGCAAGCAATTGGAAGATGGTCGTACTTTGTCCGACTAC 2372 Query 111277 AATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || ||||| || || || || || || |||||||||||||| ||||| Sbjct 2373 AACATTCAAAAGGAGTCAACCCTCCACTTGGTGTTGCGTCTGCGTGGTGG 2422 >seq322 Length=316913 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||||||||| || || || | || ||||| || ||||| | || || || Sbjct 56428 ATGCAAATTTTCGTTAAGACCCTAACGGGCAAGACTATTACTCTTGAGGTTGAGCCTTCG 56369 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTC-GATCA 111218 ||| | ||| || || || |||||| ||||| ||||| | |||| | ||||| Sbjct 56368 GATACAATTGAGCATGTTAAGGCGAAAATTCAAGACAAGGAAGG-GATCCCTCCAGATCA 56310 Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278 ||| | || |||| || || || ||||| |||||| ||| | |||||||| || Sbjct 56309 ACAGCGCCTAATTTTCGCAGGAAAGCAATTAGAAGATGGGCGAACCTTAGCCGATTACAA 56250 Query 111279 TATACAAAAAGAATCTACACTACATTTAGT 111308 ||| ||||| |||||||| |||||||||| Sbjct 56249 TATTCAAAAGGAATCTACTTTACATTTAGT 56220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421365644783920