Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_031933.1 Length=114180 Score E Sequences producing significant alignments: (Bits) Value seq81708 120 2e-22 seq85787 114 9e-21 >seq81708 Length=1085 Score = 120 bits (132), Expect = 2e-22 Identities = 131/172 (76%), Gaps = 4/172 (2%) Strand=Plus/Plus Query 28005 GTAAATGTACGACTAATAACGTCGTTCTGTTGTTCACGCGTCAATGCGTTAAATCGAACA 28064 |||||||||||| ||||||| || ||| || || |||||| |||||||| || || Sbjct 251 GTAAATGTACGAGTAATAACATCACGCTGCTGCTCTGGCGTCAGCGCGTTAAAGCGCACG 310 Query 28065 GCATAGCCAGAGACACGGATGGTCAACTGAGGATATTTTTCAGGATGTTTCTGCGCATC- 28123 |||||||| || || || ||||||||||| ||||||||||| ||||| ||| ||||| Sbjct 311 GCATAGCCGGAAACGCGAATGGTCAACTGTGGATATTTTTCCGGATGGTTCACGGCATCT 370 Query 28124 -CAAAAGCTGATCACGGCTTAACACATTGACATTTAGGTGCTGACCACCCTC 28174 | || | | ||||| | | || || || || |||||||||||||| || Sbjct 371 TCCAACGTT--TCACGACGCAGTACGTTTACGTTCAGGTGCTGACCACCTTC 420 >seq85787 Length=1013 Score = 114 bits (126), Expect = 9e-21 Identities = 137/186 (74%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 27991 ATTATATCGCCTGAGTAAATGTACGACTAATAACGTCGTTCTGTTGTTCACGCGTCAATG 28050 |||| | || ||| || || ||||| |||| || || ||||| || || || | | Sbjct 588 ATTACAACGACTGGGTGAAAGTACGTGTAATTACATCTTTCTGCTGCTCTTTAGTGAGCG 647 Query 28051 CGTTAAATCGAACAGCATAGCCAGAGACACGGATGGTCAACTGAGGATATTTTTCAGGAT 28110 ||| || || |||||||||||||| || |||||||||| ||| |||||||| || |||| Sbjct 648 AGTTGAAGCGTACAGCATAGCCAGAAACGCGGATGGTCAGCTGCGGATATTTCTCCGGAT 707 Query 28111 GTTTCTGCGCATCCAAAAGCTGATCACGGCTTAACACATTGACATTTAGGTGCTGACCAC 28170 ||| | |||||||| ||| ||||| | | || ||||| || || || ||||||| Sbjct 708 GTTCCATGGCATCCAACAGCATCTCACGATTCATTACGTTGACGTTCAGATGTTGACCAC 767 Query 28171 CCTCGA 28176 | |||| Sbjct 768 CTTCGA 773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 364865388581670