Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_032111.1
Length=163005
Score E
Sequences producing significant alignments: (Bits) Value
seq22 197 1e-45
seq59797 95.1 1e-14
>seq22
Length=933496
Score = 197 bits (218), Expect = 1e-45
Identities = 465/692 (67%), Gaps = 10/692 (1%)
Strand=Plus/Minus
Query 23343 ATCTGCTACAAATTCAATATATTGACACATCAAATCATAGTTTATACCTATTAGTTTTAC 23402
|||||| |||||||||||||| | | |||| | | | || || || || | || ||
Sbjct 329799 ATCTGCCACAAATTCAATATAATCAGACATTAGTTGGCAATTCATGCCAATCAAATTCAC 329740
Query 23403 TGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACAGCATCTTTAATTATTTGAAC 23462
|| | |||||| ||||||| || |||||| |||||| || ||| |||| ||
Sbjct 329739 AGGTAAGGCATCAGTTAAGAATTCTTGTTCAATTTTAACAGCTTCAGCAATGATTTCAAT 329680
Query 23463 AATAACTTCTTCACTAGGTGGATATTTTAAATACTTAAACAATAAACATGCAAAATCACA 23522
|||| || ||| || | | | | | |||| | || |||||||| ||
Sbjct 329679 AATACGGTCCCTACTTGGCTTCTGAATGAGGTGTTGGAACATCAGGCAAGCAAAATCGCA 329620
Query 23523 ATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCC 23582
||||| ||||| ||||| ||| | |||||||| ||||| || || ||||||| ||
Sbjct 329619 ATGTAATCCTTCGTCCCTTGAAATTAGCTCATTAGAGAATGTCAAACCAGGCATTAGGCC 329560
Query 23583 TCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGC 23642
||||| || | |||||| |||| |||||| || ||||||||| || ||||| ||
Sbjct 329559 CCGTTTCTTCAGCCAAAAGATTGAAGCAAAACTGCCACTAAAGAAAATGCCTTCAACCGC 329500
Query 23643 CGCAAAGGCCACAAGACGTGTACCAAATGTTGC--ATTATAATCAGAAATCCAttttttt 23700
||||| || | | |||| ||||| | || ||| || |||||||| |
Sbjct 329499 GGCAAATGCTATTATACGTTCGCCAAAGTTGGCCGATTTCGAT--GAAATCCACGCCAGT 329442
Query 23701 GTCCAATTAGCCTTCAATTTTACA-CACTCAATTGTTTCAATTGCTTTTAAGA-GAAAAG 23758
| ||||| |||||| || ||| || || | || ||||| || || || | | ||
Sbjct 329441 GCCCAATCAGCCTTGCGCTTAACAGCAGGCA-TCGTCTCAATAGCATTGAACAAGTAATC 329383
Query 23759 TTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGAATGAA 23818
||| ||| ||| | |||||||||||||||| || || |||||||||||||| |
Sbjct 329382 CCTTTGCTTGCC-ATCCTTAATATATGTATCAATTAATATGCTGTACATTTCAGAATGCA 329324
Query 23819 TATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACAATTGAACATCAT 23878
||| || || || || ||||| ||||| || || | || || | | |||||| || |
Sbjct 329323 CATTCTCCATGGCGATTTGAAATCCATAGAAGCAACGCGCCTCTGTGATTTGAACTTCTT 329264
Query 23879 TAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCAGCAAAGAAAGCAA 23938
|| | || | |||| ||||| || ||||||||||| || |||||||| || |
Sbjct 329263 GGCTGAAGCGTTCAACTAAGTTTTCATTCACAATACCATCGGAGGCGGCAAAGAATGCCA 329204
Query 23939 GAACATATTTTATAAAATGTCTTTCATCAGTTGAT-AATTTTTTCCAATCATTAATATCT 23997
||| | || ||||| | ||||| || | | | |||||||| ||||||
Sbjct 329203 AAACGTGCGAAATGAAATGGCGTTCAT-TGTCGGTGAGACGCGCCCAATCATCCATATCT 329145
Query 23998 TTTGATAAATCAACTTCATCAACTGTCCAAAA 24029
|| || | ||||| || || || ||||| ||
Sbjct 329144 TTGGAAAGGTCAACCTCTTCCACCGTCCAGAA 329113
>seq59797
Length=1646
Score = 95.1 bits (104), Expect = 1e-14
Identities = 145/207 (70%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 23544 AATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATAT 23603
||| ||||||||||| ||||| || || ||||| || |||| || || | ||| || ||
Sbjct 1635 AATTAATTCATTAGAGAATGTCAAACCAGGCATCAAACCTCTCTTCTTGAGCCAGAAAAT 1576
Query 23604 TGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGT 23663
| |||||||| || || ||||||||||| || || || ||||| || || || |
Sbjct 1575 GGATGCAAATGAACCAGAGAAGAAAATACCTTCTACGGCAGCAAATGCTACTAGTCTCTC 1516
Query 23664 ACCAAATGTTGCATTATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTAC 23723
|||||||| ||| || | ||| ||||| || || ||| | ||| || || |
Sbjct 1515 ACCAAATGATGCTTTCTCGTCATTGATCCACTTAACTGCCCAGTCAGCTTTGCGCTTAAT 1456
Query 23724 ACACTCAATTGTTTCAATTGCTTTTAA 23750
|| ||| |||||||| || || ||
Sbjct 1455 GCATGGAATAGTTTCAATAGCGTTGAA 1429
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 520923032938000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |