Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq22 197 1e-45 seq59797 95.1 1e-14 >seq22 Length=933496 Score = 197 bits (218), Expect = 1e-45 Identities = 465/692 (67%), Gaps = 10/692 (1%) Strand=Plus/Minus Query 23343 ATCTGCTACAAATTCAATATATTGACACATCAAATCATAGTTTATACCTATTAGTTTTAC 23402 |||||| |||||||||||||| | | |||| | | | || || || || | || || Sbjct 329799 ATCTGCCACAAATTCAATATAATCAGACATTAGTTGGCAATTCATGCCAATCAAATTCAC 329740 Query 23403 TGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACAGCATCTTTAATTATTTGAAC 23462 || | |||||| ||||||| || |||||| |||||| || ||| |||| || Sbjct 329739 AGGTAAGGCATCAGTTAAGAATTCTTGTTCAATTTTAACAGCTTCAGCAATGATTTCAAT 329680 Query 23463 AATAACTTCTTCACTAGGTGGATATTTTAAATACTTAAACAATAAACATGCAAAATCACA 23522 |||| || ||| || | | | | | |||| | || |||||||| || Sbjct 329679 AATACGGTCCCTACTTGGCTTCTGAATGAGGTGTTGGAACATCAGGCAAGCAAAATCGCA 329620 Query 23523 ATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCC 23582 ||||| ||||| ||||| ||| | |||||||| ||||| || || ||||||| || Sbjct 329619 ATGTAATCCTTCGTCCCTTGAAATTAGCTCATTAGAGAATGTCAAACCAGGCATTAGGCC 329560 Query 23583 TCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGC 23642 ||||| || | |||||| |||| |||||| || ||||||||| || ||||| || Sbjct 329559 CCGTTTCTTCAGCCAAAAGATTGAAGCAAAACTGCCACTAAAGAAAATGCCTTCAACCGC 329500 Query 23643 CGCAAAGGCCACAAGACGTGTACCAAATGTTGC--ATTATAATCAGAAATCCAttttttt 23700 ||||| || | | |||| ||||| | || ||| || |||||||| | Sbjct 329499 GGCAAATGCTATTATACGTTCGCCAAAGTTGGCCGATTTCGAT--GAAATCCACGCCAGT 329442 Query 23701 GTCCAATTAGCCTTCAATTTTACA-CACTCAATTGTTTCAATTGCTTTTAAGA-GAAAAG 23758 | ||||| |||||| || ||| || || | || ||||| || || || | | || Sbjct 329441 GCCCAATCAGCCTTGCGCTTAACAGCAGGCA-TCGTCTCAATAGCATTGAACAAGTAATC 329383 Query 23759 TTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGAATGAA 23818 ||| ||| ||| | |||||||||||||||| || || |||||||||||||| | Sbjct 329382 CCTTTGCTTGCC-ATCCTTAATATATGTATCAATTAATATGCTGTACATTTCAGAATGCA 329324 Query 23819 TATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACAATTGAACATCAT 23878 ||| || || || || ||||| ||||| || || | || || | | |||||| || | Sbjct 329323 CATTCTCCATGGCGATTTGAAATCCATAGAAGCAACGCGCCTCTGTGATTTGAACTTCTT 329264 Query 23879 TAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCAGCAAAGAAAGCAA 23938 || | || | |||| ||||| || ||||||||||| || |||||||| || | Sbjct 329263 GGCTGAAGCGTTCAACTAAGTTTTCATTCACAATACCATCGGAGGCGGCAAAGAATGCCA 329204 Query 23939 GAACATATTTTATAAAATGTCTTTCATCAGTTGAT-AATTTTTTCCAATCATTAATATCT 23997 ||| | || ||||| | ||||| || | | | |||||||| |||||| Sbjct 329203 AAACGTGCGAAATGAAATGGCGTTCAT-TGTCGGTGAGACGCGCCCAATCATCCATATCT 329145 Query 23998 TTTGATAAATCAACTTCATCAACTGTCCAAAA 24029 || || | ||||| || || || ||||| || Sbjct 329144 TTGGAAAGGTCAACCTCTTCCACCGTCCAGAA 329113 >seq59797 Length=1646 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 23544 AATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATAT 23603 ||| ||||||||||| ||||| || || ||||| || |||| || || | ||| || || Sbjct 1635 AATTAATTCATTAGAGAATGTCAAACCAGGCATCAAACCTCTCTTCTTGAGCCAGAAAAT 1576 Query 23604 TGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGT 23663 | |||||||| || || ||||||||||| || || || ||||| || || || | Sbjct 1575 GGATGCAAATGAACCAGAGAAGAAAATACCTTCTACGGCAGCAAATGCTACTAGTCTCTC 1516 Query 23664 ACCAAATGTTGCATTATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTAC 23723 |||||||| ||| || | ||| ||||| || || ||| | ||| || || | Sbjct 1515 ACCAAATGATGCTTTCTCGTCATTGATCCACTTAACTGCCCAGTCAGCTTTGCGCTTAAT 1456 Query 23724 ACACTCAATTGTTTCAATTGCTTTTAA 23750 || ||| |||||||| || || || Sbjct 1455 GCATGGAATAGTTTCAATAGCGTTGAA 1429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 520923032938000