Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_033423.1
Length=208501
Score E
Sequences producing significant alignments: (Bits) Value
seq81517 109 7e-19
seq4297 93.3 6e-14
>seq81517
Length=1088
Score = 109 bits (120), Expect = 7e-19
Identities = 228/337 (68%), Gaps = 6/337 (2%)
Strand=Plus/Minus
Query 50473 AAGGAGATTTAGGACCTGTTTACGGTTTTCAATGGAGACATTTTGGAGCGCGTTACATAA 50532
|||| ||||| || || || || || ||||| ||| | ||||||||||| || ||
Sbjct 886 AAGGTGATTTGGGCCCCGTGTATGGATTTCAGTGGCGCCATTTTGGAGCCAAATATCGAA 827
Query 50533 ATTGCGACGTAAATTACGAAGGTCAAGGCGTGGATCAACTGCAAAA---AATTATAACGA 50589
||| ||| |||||| ||| ||||||| |||||||| ||||| |||| || |
Sbjct 826 CATGCAACGATAATTACTCGGGTGAAGGCGTAGATCAACTTCAAAATGTAATTGATACAA 767
Query 50590 CGTTGAAAACAAACCCCGACGATCGGCGTATTTTAATGACCGCCTGGAATCCAACCGATA 50649
| ||||||| || | ||||| || || ||||| | || |||||||| || |
Sbjct 766 --TCCGAAACAAA-CCGAATGATCGTCGCATAATAATGTCTGCGTGGAATCCCCTTGACA 710
Query 50650 TAGATCAAACCGTTTTACCTCCGTGTCATGTTTTATGTCAATTTTATGCCACAGACAATG 50709
| |||| | ||||||| |||||| | || ||||||| | || | ||
Sbjct 709 TTCCGCAAATGGCACTACCTCCTTGTCATTGTCTAGCACAATTTTTCGTTGCAAATGGTG 650
Query 50710 TTTTATCCTGTCAATGTTATCAAAGATCAGCTGATATGGGTTTAGGCGTTCCTTTCAACG 50769
| || ||||| | |||||| | ||||| ||||| || ||||| || |||||
Sbjct 649 AGCTGTCTTGTCAGTTGTATCAACGTAGCGCTGACATGGGATTGGGCGTGCCATTCAATA 590
Query 50770 TAGCTTCTTACGCTTTATTAACGTATTTGATCGCTCA 50806
| || ||||| ||||| ||||| ||| |||| || ||
Sbjct 589 TCGCCTCTTATGCTTTGTTAACATATATGATTGCACA 553
>seq4297
Length=52141
Score = 93.3 bits (102), Expect = 6e-14
Identities = 270/414 (65%), Gaps = 20/414 (5%)
Strand=Plus/Minus
Query 155728 ATCGACTCAACGCCGTCGATTGAGCGGCGCGTACCAACCCTTCCAATTCAGCGCCGCTGT 155787
||||| ||| || || ||||| || || || ||||| || ||||| ||||| || ||
Sbjct 39380 ATCGATTCATAGCGGTGGATTGTGCCGCACGCACCAAACCCTCCAACTCAGCACCACTAA 39321
Query 155788 AATTTTTAGTTTCAACGGCTATTTTATTTAAGTCTACGTCGGAAGCTAATATGTTGT--- 155844
| || || ||| | || || | || | || ||||||| ||| | |||||
Sbjct 39320 AGTTCTTTGTTAATGCAGCAATCTCCTTGGAATCGACGTCGGGAGCAATCTTGTTGAATT 39261
Query 155845 -GAGATTTCATTTTAGCAACGTGCACCTTTAAAATTTGAAGACGCCCCTTTTCATCGGGT 155903
| | | | ||| ||| | || | |||||| | || |||| ||| | ||
Sbjct 39260 CGCGCATACGCTTTGT----GTGTATGTTCAGAATTTGCACGCGACCCTCTTCGTTCGGC 39205
Query 155904 AATCCAATTTCTATCTTCAATTCCAACCGCCCAGGTCTTAATAATGCTTCGTCAATTAAG 155963
| | || || || | || |||||| || || |||| | || ||||||||||| | |
Sbjct 39204 AGGCTGATCTCCATTTGCACTTCCAAGCGACCGGGTCGCATCAAAGCTTCGTCAATCATG 39145
Query 155964 TCGGGTCTGTTGGTCATACCTATGATTAAAATGTTGTTTAAAGATTCTACACCGTCTATT 156023
|| |||||||||||||||| || | || || ||||||| ||| || || || |||
Sbjct 39144 TCACGTCTGTTGGTCATACCAATAACCAATATATTGTTTAGCTGTTCCACGCCATCGATT 39085
Query 156024 TTAGACAATAATTGATTGACTACGGCGTCGTG--CG-------TG---GCGTTATCACCG 156071
|| | | |||||||| || || | |||||| || || ||| |||
Sbjct 39084 TTGGCTAGCAATTGATTAACCACTGTGTCGTGTACGCCACTATTGCCAGCGACCGAACCA 39025
Query 156072 CGTTTTTTACACAGAGCATCTATTTCATCGAAGACGATAACGTGTAATCCGCTG 156125
|| ||| || | |||||| ||||||||||| | ||| | || || ||||||
Sbjct 39024 CGCGCTTTGCAGATAGCATCGATTTCATCGAAAATGATGATATGCAAACCGCTG 38971
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 666352507405200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |