Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_033423.1 Length=208501 Score E Sequences producing significant alignments: (Bits) Value seq81517 109 7e-19 seq4297 93.3 6e-14 >seq81517 Length=1088 Score = 109 bits (120), Expect = 7e-19 Identities = 228/337 (68%), Gaps = 6/337 (2%) Strand=Plus/Minus Query 50473 AAGGAGATTTAGGACCTGTTTACGGTTTTCAATGGAGACATTTTGGAGCGCGTTACATAA 50532 |||| ||||| || || || || || ||||| ||| | ||||||||||| || || Sbjct 886 AAGGTGATTTGGGCCCCGTGTATGGATTTCAGTGGCGCCATTTTGGAGCCAAATATCGAA 827 Query 50533 ATTGCGACGTAAATTACGAAGGTCAAGGCGTGGATCAACTGCAAAA---AATTATAACGA 50589 ||| ||| |||||| ||| ||||||| |||||||| ||||| |||| || | Sbjct 826 CATGCAACGATAATTACTCGGGTGAAGGCGTAGATCAACTTCAAAATGTAATTGATACAA 767 Query 50590 CGTTGAAAACAAACCCCGACGATCGGCGTATTTTAATGACCGCCTGGAATCCAACCGATA 50649 | ||||||| || | ||||| || || ||||| | || |||||||| || | Sbjct 766 --TCCGAAACAAA-CCGAATGATCGTCGCATAATAATGTCTGCGTGGAATCCCCTTGACA 710 Query 50650 TAGATCAAACCGTTTTACCTCCGTGTCATGTTTTATGTCAATTTTATGCCACAGACAATG 50709 | |||| | ||||||| |||||| | || ||||||| | || | || Sbjct 709 TTCCGCAAATGGCACTACCTCCTTGTCATTGTCTAGCACAATTTTTCGTTGCAAATGGTG 650 Query 50710 TTTTATCCTGTCAATGTTATCAAAGATCAGCTGATATGGGTTTAGGCGTTCCTTTCAACG 50769 | || ||||| | |||||| | ||||| ||||| || ||||| || ||||| Sbjct 649 AGCTGTCTTGTCAGTTGTATCAACGTAGCGCTGACATGGGATTGGGCGTGCCATTCAATA 590 Query 50770 TAGCTTCTTACGCTTTATTAACGTATTTGATCGCTCA 50806 | || ||||| ||||| ||||| ||| |||| || || Sbjct 589 TCGCCTCTTATGCTTTGTTAACATATATGATTGCACA 553 >seq4297 Length=52141 Score = 93.3 bits (102), Expect = 6e-14 Identities = 270/414 (65%), Gaps = 20/414 (5%) Strand=Plus/Minus Query 155728 ATCGACTCAACGCCGTCGATTGAGCGGCGCGTACCAACCCTTCCAATTCAGCGCCGCTGT 155787 ||||| ||| || || ||||| || || || ||||| || ||||| ||||| || || Sbjct 39380 ATCGATTCATAGCGGTGGATTGTGCCGCACGCACCAAACCCTCCAACTCAGCACCACTAA 39321 Query 155788 AATTTTTAGTTTCAACGGCTATTTTATTTAAGTCTACGTCGGAAGCTAATATGTTGT--- 155844 | || || ||| | || || | || | || ||||||| ||| | ||||| Sbjct 39320 AGTTCTTTGTTAATGCAGCAATCTCCTTGGAATCGACGTCGGGAGCAATCTTGTTGAATT 39261 Query 155845 -GAGATTTCATTTTAGCAACGTGCACCTTTAAAATTTGAAGACGCCCCTTTTCATCGGGT 155903 | | | | ||| ||| | || | |||||| | || |||| ||| | || Sbjct 39260 CGCGCATACGCTTTGT----GTGTATGTTCAGAATTTGCACGCGACCCTCTTCGTTCGGC 39205 Query 155904 AATCCAATTTCTATCTTCAATTCCAACCGCCCAGGTCTTAATAATGCTTCGTCAATTAAG 155963 | | || || || | || |||||| || || |||| | || ||||||||||| | | Sbjct 39204 AGGCTGATCTCCATTTGCACTTCCAAGCGACCGGGTCGCATCAAAGCTTCGTCAATCATG 39145 Query 155964 TCGGGTCTGTTGGTCATACCTATGATTAAAATGTTGTTTAAAGATTCTACACCGTCTATT 156023 || |||||||||||||||| || | || || ||||||| ||| || || || ||| Sbjct 39144 TCACGTCTGTTGGTCATACCAATAACCAATATATTGTTTAGCTGTTCCACGCCATCGATT 39085 Query 156024 TTAGACAATAATTGATTGACTACGGCGTCGTG--CG-------TG---GCGTTATCACCG 156071 || | | |||||||| || || | |||||| || || ||| ||| Sbjct 39084 TTGGCTAGCAATTGATTAACCACTGTGTCGTGTACGCCACTATTGCCAGCGACCGAACCA 39025 Query 156072 CGTTTTTTACACAGAGCATCTATTTCATCGAAGACGATAACGTGTAATCCGCTG 156125 || ||| || | |||||| ||||||||||| | ||| | || || |||||| Sbjct 39024 CGCGCTTTGCAGATAGCATCGATTTCATCGAAAATGATGATATGCAAACCGCTG 38971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 666352507405200