Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_001416.1 Length=48502 Score E Sequences producing significant alignments: (Bits) Value seq195083 311 3e-80 seq193734 136 1e-27 >seq195083 Length=147271 Score = 311 bits (344), Expect = 3e-80 Identities = 191/197 (97%), Gaps = 6/197 (3%) Strand=Plus/Plus Query 5 GGCGACCTCGCGGGTTTTCGC--TATTTATGAAAATTTTCCGGTTTAAGGCGTTTCCGTT 62 |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 53760 GGCGAC-TCGCGGGTTTTCGCCGTATTTATGAAAATTTTCCGGTTTAAGGCGTTTCCGTT 53818 Query 63 CTTCTTCGTCATAACTTAATGTTTTTATTTAAAATACCCTCTGAAAAGAAAGGAAACGAC 122 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 53819 CTTCTTCGTCATAACTTAATGTTTTTA-TTAAAATACCCTCTGAAAAGAAAGGAAACGAC 53877 Query 123 AGGTGCTGAAAGCGAGGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGG 182 ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| Sbjct 53878 AGGTGCTGAAAGCGA-GCTTTTTGGCCTCTGTCG-TTCCTTTCTCTGTTTTTGTCCGTGG 53935 Query 183 AATGAACAATGGAAGTC 199 ||||||||||||||||| Sbjct 53936 AATGAACAATGGAAGTC 53952 >seq193734 Length=145444 Score = 136 bits (150), Expect = 1e-27 Identities = 75/75 (100%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 48356 ACGTTAAGTTGATGCAGATCAATTAATACGATACCTGCGTCATAATTGATTATTTGACGT 48415 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 138783 ACGTTAAGTTGATGCAGATCAATTAATACGATACCTGCGTCATAATTGATTATTTGACGT 138724 Query 48416 GGTTTGATGGCCTCC 48430 ||||||||||||||| Sbjct 138723 GGTTTGATGGCCTCC 138709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 154725527062912