Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq48326 125 6e-24 seq9079 122 7e-23 seq74841 102 7e-17 seq4323 102 7e-17 seq176411 95.1 1e-14 >seq48326 Length=57257 Score = 125 bits (138), Expect = 6e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || ||||||| ||| || | || | || ||||||||||||||||| ||||| | Sbjct 53554 TTCCTCCGCGCAGCCGGAGGACAAGGTGAAGGGTCGACTCCTTTTGAATGTTGTAGTCAG 53495 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 |||||| || |||| || ||||||||||||||| | ||||| | |||||| || | Sbjct 53494 ACAGGGTACGGCCGTCTTCTAGCTGTTTGCCCGCAAAGATAAGACGCTGCTGATCAGGTG 53435 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | ||||||||||| ||| || ||||| | | | || |||| ||||| Sbjct 53434 GAATCCCTTCCTTGTCCTGGATTTTCGCCTTCACGTTCTCAATCGTGTCACTCGGCTCGA 53375 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| || |||||||| || | || || || || |||||||| Sbjct 53374 CCTCCAGGGTGATCGTCTTGCCCGTCAGAGTCTTCACGAAAATTTGCAT 53326 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || |||| || || | ||| | ||||||||||| |||||||| ||||| | Sbjct 53324 CCACCGCGGAGCCGCAGGACGAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGAT 53265 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || |||| || ||||| || || || | || || | |||||| ||| || Sbjct 53264 AGTGTGCGGCCGTCTTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCCGGAGGA 53205 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| ||||||| || || | | | || |||| |||||| | Sbjct 53204 ATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATTTTCAATGGTGTCACTGGGCTCGACT 53145 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || ||||| || ||||| | || |||||||| || ||||| Sbjct 53144 TCGAGCGTGATGGTTTTACCGGTGAGTGTCTTGACAAAAATCTGCAT 53098 >seq9079 Length=83715 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || |||| ||||| | || | ||||||||| || |||||||| ||||| | Sbjct 3108 CCTCCACGAAGCCGTAGCACAAGGTGAAGAGTGGACTCTTTCTGAATGTTGTAGTCTGAG 3167 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || ||||||| ||||||||||| ||| | || || | ||||||||| || Sbjct 3168 AGTGTACGGCCGTCCTCGAGCTGTTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGTGGA 3227 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| ||||||| ||| || | ||| || || | ||| || | Sbjct 3228 ATTCCCTCCTTGTCTTGGATCTTTGCTTTTACGTTCTCGATCGTGTCGCTGGGTTCAACT 3287 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || || |||||||| || || || |||||||| || ||||| Sbjct 3288 TCCAGCGTGATCGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 3334 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || ||||||| ||| || | || | || ||||||||||||||||| ||||| | Sbjct 2650 TTCCTCCGCGCAGCCGGAGGACAAGGTGAAGGGTCGACTCCTTTTGAATGTTGTAGTCAG 2709 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 |||||| || |||| || ||||||||||||||| | ||||| | ||||| || | Sbjct 2710 ACAGGGTGCGGCCGTCTTCTAGCTGTTTGCCCGCAAAGATAAGACGTTGCTGATCAGGTG 2769 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | ||||||||||| ||| ||| || || | | | || |||| ||||| Sbjct 2770 GGATCCCTTCCTTGTCCTGGATTTTTGCCTTGACATTTTCAATGGTGTCACTAGGCTCGA 2829 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||| | || ||||| || ||||| | || |||||||| || ||||| Sbjct 2830 CTTCGAGCGTGATGGTTTTACCGGTGAGTGTCTTGACAAAAATCTGCAT 2878 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || || ||||| ||||| || ||||| | || || | ||||||||| ||| ||||| Sbjct 2454 GTCGATTCCTTCTGAATATTGTAGTCGGAGAGAGTGCGCCCGTCCTCCAACTGCTTGCCT 2513 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || || | ||| |||||| || | ||| |||||||| ||| || ||| Sbjct 2514 GCAAAGATGAGACGCTGTTGGTCCGGTGGAATGCCCTCCTTGTCCTGGATTTTAGCCTTC 2573 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | ||| || || | ||||| || | ||| |||||||||||||| | || Sbjct 2574 ACATTTTCGATGGTGTCGCTAGGCTCAACCTCTAGGGTTATGGTCTTGCCGGTGAGGGTC 2633 Query 21159 TTGACAAATATTTGCATT 21176 || || || || |||||| Sbjct 2634 TTCACGAAGATCTGCATT 2651 >seq74841 Length=4471 Score = 102 bits (112), Expect = 7e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||||| ||| || | || | || ||||||||||||||||| ||||||| Sbjct 2987 CCTCCGCGCAGCCGGAGGACGAGGTGAAGGGTAGACTCCTTTTGAATGTTGTAGTCCGAG 2928 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || |||| || ||||| ||||| || ||||||| | |||||||||| || Sbjct 2927 AGGGTGCGGCCGTCTTCGAGCTGCTTGCCGGCGAAAATAAGACGCTGCTGGTCCGGAGGA 2868 Query 21069 ACGCCTTCCTTGTC 21082 | |||||| ||||| Sbjct 2867 ATGCCTTCTTTGTC 2854 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || || ||||| |||||||| || || | || || || ||||||||| ||| ||||| Sbjct 3185 GTCGATTCCTTCTGAATGTTGTAATCGGAGAGAGTGCGGCCGTCCTCCAACTGCTTGCCT 3126 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || || | ||| ||||| || | ||| |||||||| ||| || ||| Sbjct 3125 GCAAAGATGAGACGCTGTTGGTCTGGTGGAATGCCCTCCTTGTCCTGGATTTTAGCCTTC 3066 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | || || || | |||||| |||| ||| |||||||||||||| | || Sbjct 3065 ACATTTTTGATGGTGTCGCTGGGCTCGACCTCCAGGGTTATGGTCTTGCCGGTGAGGGTC 3006 Query 21159 TTGACAAATATTTGCAT 21175 || || || |||||||| Sbjct 3005 TTAACGAAGATTTGCAT 2989 >seq4323 Length=113087 Score = 102 bits (112), Expect = 7e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||||| ||| || | || | || ||||||||||||||||| ||||||| Sbjct 37124 CCTCCGCGCAGCCGGAGGACGAGGTGAAGGGTAGACTCCTTTTGAATGTTGTAGTCCGAG 37183 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || |||| || ||||| ||||| || ||||||| | |||||||||| || Sbjct 37184 AGGGTGCGGCCGTCTTCGAGCTGCTTGCCGGCGAAAATAAGACGCTGCTGGTCCGGAGGA 37243 Query 21069 ACGCCTTCCTTGTC 21082 | |||||| ||||| Sbjct 37244 ATGCCTTCTTTGTC 37257 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || |||| ||| || | || | || || ||||| |||||||| || || | Sbjct 36896 CCACCACGGAGCCGGAGGACAAGGTGGAGGGTCGATTCCTTCTGAATGTTGTAATCGGAG 36955 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || ||||||||| ||| ||||| ||| | || || | ||| ||||| || Sbjct 36956 AGAGTGCGGCCGTCCTCCAACTGCTTGCCTGCAAAGATGAGACGCTGTTGGTCTGGTGGA 37015 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| ||| || ||||| | || || || | |||||| Sbjct 37016 ATGCCCTCCTTGTCCTGGATTTTAGCCTTCACATTTTTGATGGTGTCGCTGGGCTCGACC 37075 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| |||||||||||||| | || || || || |||||||| Sbjct 37076 TCCAGGGTTATGGTCTTGCCGGTGAGGGTCTTAACGAAGATTTGCAT 37122 >seq176411 Length=6678 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || || ||||| |||||||| || || || || || || ||||||||| ||| ||||| Sbjct 4829 GTCGATTCCTTCTGAATGTTGTAATCGGCGAGAGTGCGGCCGTCCTCCAACTGCTTGCCT 4888 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || || | ||| ||||| || | ||| |||||||| ||| || ||| Sbjct 4889 GCAAAGATGAGACGCTGTTGGTCTGGTGGAATGCCCTCCTTGTCCTGGATTTTAGCCTTC 4948 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | || || || | |||||| |||| ||| |||||||||||||| | || Sbjct 4949 ACATTTTTGATGGTGTCGCTGGGCTCGACCTCCAGGGTTATGGTCTTGCCGGTGAGGGTC 5008 Query 21159 TTGACAAATATTTGCAT 21175 || || || |||||||| Sbjct 5009 TTAACGAAGATTTGCAT 5025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421255242332144