Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq48326 140 3e-28 seq9079 134 1e-26 seq74841 107 2e-18 seq4323 107 2e-18 seq2125 91.5 2e-13 seq176411 82.4 8e-11 >seq48326 Length=57257 Score = 140 bits (154), Expect = 3e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || ||||| || ||||||||||| |||| ||||| ||| Sbjct 53098 ATGCAGATTTTTGTCAAGACACTCACCGGTAAAACCATCACGCTCGAAGTCGAGCCCAGT 53157 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | ||| |||||| ||| || | ||||| || ||||| || |||| ||| Sbjct 53158 GACACCATTGAAAATGTCAAGGCAAAGATCCAGGACAAGGAAGGCATTCCTCCGGATCAG 53217 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || ||||||| ||| || || ||||| || |||| ||||| || ||||||||| Sbjct 53218 CAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAAGACGGCCGCACACTATCTGACTACAAC 53277 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 || ||||||||| |||| || ||||| || |||| Sbjct 53278 ATTCAGAAGGAGTCCACCCTTCATCTCGTCCTGCG 53312 Score = 114 bits (126), Expect = 1e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || |||||||| || |||||| | || ||||| | | Sbjct 53326 ATGCAAATTTTCGTGAAGACTCTGACGGGCAAGACGATCACCCTGGAGGTCGAGCCGAGT 53385 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || |||| | |||| ||||| | ||||| || || || || | || || Sbjct 53386 GACACGATTGAGAACG-TGAAGGCGAAAATCCAGGACAAGGAAGGGATTCCACCTGATCA 53444 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| |||||||||||||| || |||| || ||||| |||||||| Sbjct 53445 GCAGCGTCTTATCTTTGCGGGCAAACAGCTAGAAGACGGCCGTACCCTGTCTGACTACAA 53504 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||| || |||||| | || || || || || Sbjct 53505 CATTCAAAAGGAGTCGACCCTTCACCTTGT 53534 Score = 109 bits (120), Expect = 6e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | || ||||| || ||||| | || || ||| ||| | Sbjct 52870 ATGCAGATCTTTGTCAAGACTTTGACTGGCAAGACAATCACGCTGGAAGTTGAACCCAGC 52929 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | || | ||| || | ||||| ||||| || || | ||||| Sbjct 52930 GACACGATCGAGAACG-TAAAAGCAAAGATCCAAGACAAGGAGGGAATTCCACCAGACCA 52988 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| || ||||| ||||| || |||| ||||| || |||||||| Sbjct 52989 GCAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACACTTTCGGACTACAA 53048 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||| ||| |||| || || | ||| |||| | | |||||| Sbjct 53049 CATCCAGAAAGAGTCCACCCTCCACTTGGTGCTGCGACTTCGTGGCGGC 53097 >seq9079 Length=83715 Score = 134 bits (148), Expect = 1e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || ||||| || ||||||||||| |||| ||||| | | Sbjct 2878 ATGCAGATTTTTGTCAAGACACTCACCGGTAAAACCATCACGCTCGAAGTCGAGCCTAGT 2819 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | ||| |||||| |||||| | ||||| || || ||||| | || ||| Sbjct 2818 GACACCATTGAAAATGTCAAGGCAAAAATCCAGGACAAGGAAGGGATCCCACCTGATCAG 2759 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| || |||| |||||||||||||| || |||| |||||||| ||||||||| Sbjct 2758 CAACGTCTTATCTTTGCGGGCAAACAGCTAGAAGACGGCCGCACCCTGTCTGACTACAAC 2699 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || || |||||| | || || || || || Sbjct 2698 ATTCAAAAGGAGTCGACCCTTCACCTTGT 2670 Score = 125 bits (138), Expect = 7e-24 Identities = 173/238 (73%), Gaps = 7/238 (3%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || |||||||| ||||| | || || ||| ||| Sbjct 3106 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAAACGATCACGCTAGAAGTTGAACCCAGT 3047 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| |||| | ||| || | ||||| ||||| ||||| | ||||| Sbjct 3046 GACACGATCGAGAACG-TCAAAGCAAAGATCCAAGACAAGGAGGGTATCCCACCTGACCA 2988 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| || ||||| ||||| || |||| ||||| ||| |||||||| Sbjct 2987 GCAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACACTCTCAGACTACAA 2928 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG-CTTGAGGGGCGGCGGCTTGCA 40925 ||| ||||| ||| |||| || || | ||| |||| ||| |||||||| |||| Sbjct 2927 CATTCAGAAAGAGTCCACCCTACACTTGGTGCTGCGACTT----CGCGGCGGCATGCA 2874 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | || ||||| || ||||| | || || ||| ||| | Sbjct 3334 ATGCAGATCTTTGTCAAGACTTTGACTGGCAAGACGATCACGCTGGAAGTTGAACCCAGC 3275 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | || | ||| || | ||||| ||||| || || | ||||| Sbjct 3274 GACACGATCGAGAACG-TAAAAGCAAAGATCCAAGACAAGGAGGGAATTCCACCAGACCA 3216 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| || ||||||||||| || |||| || || ||| |||||||| Sbjct 3215 GCAGCGTCTCATCTTTGCTGGCAAACAGCTCGAGGACGGCCGTACACTCTCAGACTACAA 3156 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 ||| ||||| ||| |||| || || || ||| Sbjct 3155 CATTCAGAAAGAGTCCACTCTTCACCTTGTG 3125 >seq74841 Length=4471 Score = 107 bits (118), Expect = 2e-18 Identities = 107/139 (77%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 40760 AAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCA 40819 ||||| | |||| ||||||| |||||||| ||||| || |||||||||| || || | Sbjct 2831 AAACGGTGAAGGCCAAAATTCAGGACAAAGAAGGCATTCCTCCGGACCAGCAGCGTCTTA 2890 Query 40820 TCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGG 40879 | | ||| ||||| ||||| || |||| ||||||||| ||||||||||| || |||| Sbjct 2891 TTTTCGCCGGCAAGCAGCTCGAAGACGGCCGCACCCTCTCGGACTACAACATTCAAAAGG 2950 Query 40880 AGGCCACGCTGCATCTAGT 40898 || | || || || || || Sbjct 2951 AGTCTACCCTTCACCTCGT 2969 >seq4323 Length=113087 Score = 107 bits (118), Expect = 2e-18 Identities = 107/139 (77%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 40760 AAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCA 40819 ||||| | |||| ||||||| |||||||| ||||| || |||||||||| || || | Sbjct 37280 AAACGGTGAAGGCCAAAATTCAGGACAAAGAAGGCATTCCTCCGGACCAGCAGCGTCTTA 37221 Query 40820 TCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGG 40879 | | ||| ||||| ||||| || |||| ||||||||| ||||||||||| || |||| Sbjct 37220 TTTTCGCCGGCAAGCAGCTCGAAGACGGCCGCACCCTCTCGGACTACAACATTCAAAAGG 37161 Query 40880 AGGCCACGCTGCATCTAGT 40898 || | || || || || || Sbjct 37160 AGTCTACCCTTCACCTCGT 37142 >seq2125 Length=82343 Score = 91.5 bits (100), Expect = 2e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 || ||||| | |||||||| || || |||| || ||||| |||||||| || | |||| Sbjct 76076 GGTATCCCGCCCGACCAGCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGGCGC 76017 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||| ||||||||||||||||| ||| | || ||||| || ||| |||| Sbjct 76016 ACCCTGTCGGACTACAACATCCAGAAAGAGTCGACCCTGCACCTGGTGCTGCG 75964 >seq176411 Length=6678 Score = 82.4 bits (90), Expect = 8e-11 Identities = 106/142 (75%), Gaps = 6/142 (4%) Strand=Plus/Minus Query 40760 AAACG-CTCAAGGAAAAAATTCTCGACAAAG-AGGGCATCCC--CGCGGACC--AGCAAC 40813 ||||| || |||| |||||| ||||||| ||| ||| || || ||||| |||| | Sbjct 5192 AAACGGCTGAAGGCCAAAATTTCAGACAAAGCAGGCCATTCCTCCGGGGACCCCAGCAGC 5133 Query 40814 GACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCC 40873 | || || | ||| ||||| ||||| || |||| ||||||||| ||||||||||| | Sbjct 5132 GTCTTATTTTCGCCGGCAAGCAGCTCGAAGACGGCCGCACCCTCTCGGACTACAACATTC 5073 Query 40874 AGAAGGAGGCCACGCTGCATCT 40895 | |||||| | || || || || Sbjct 5072 AAAAGGAGTCTACCCTTCACCT 5051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 513962812219840