Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq48326 140 3e-28 seq9079 140 3e-28 seq74841 118 9e-22 seq4323 118 9e-22 seq176411 116 3e-21 >seq48326 Length=57257 Score = 140 bits (154), Expect = 3e-28 Identities = 152/200 (76%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTA--TCCTCGAGCTGTTTTC 118599 || ||||| || ||||||||||| || |||||| ||| || |||||||| |||| Sbjct 53294 GTGGACTCCTTCTGAATGTTGTAGTCAG--ATAGTGTGCGGCCGTCTTCGAGCTGCTTTC 53237 Query 118600 CAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTT 118659 | ||| ||||||||||||||||||| ||||| ||||| |||||||| || ||| | Sbjct 53236 CGGCGAAGATGAGACGCTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGGATCTTTGCCT 53177 Query 118660 TAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAG 118719 | || | ||| | |||||| || |||||| |||| || | ||||| ||||| || | Sbjct 53176 TGACATTTTCAATGGTGTCACTGGGCTCGACTTCGAGCGTGATGGTTTTACCGGTGAGTG 53117 Query 118720 TTTTTACAAAAATCTGCATG 118739 | || ||||||||||||||| Sbjct 53116 TCTTGACAAAAATCTGCATG 53097 Score = 129 bits (142), Expect = 5e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || || || | || || ||||||||||| || |||||||| || |||||||| || Sbjct 53096 CCGCCACGAAGTCGCAGCACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCCGAA 53037 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||||| ||||||||||| || || || |||||||||||||||| || || || Sbjct 53036 AGTGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGTGGA 52977 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 || |||||||||||| || ||| ||| || | |||| ||||| || || || Sbjct 52976 ATTCCCTCCTTGTCTTGGATCTTTGCTTTTACGTTCTCGATCGTGTCGCTGGGTTCAACT 52917 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 || | || | || ||||| |||| ||| || ||||| ||||||||| || Sbjct 52916 TCCAGCGTGATTGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCATGCCT 52866 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| |||||||||||||| || || || || || || |||||||| || Sbjct 53522 GTCGACTCCTTTTGAATGTTGTAGTCAGACAGGGTACGGCCGTCTTCTAGCTGTTTGCCC 53463 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| |||||||||||||| || || || || |||||||| ||||| || Sbjct 53462 GCAAAGATAAGACGCTGCTGATCAGGTGGAATCCCTTCCTTGTCCTGGATTTTCGCCTTC 53403 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | ||||| | ||||||||| | ||| | ||| ||||| |||||||| Sbjct 53402 ACGTTCTCAATCGTGTCACTCGGCTCGACCTCCAGGGTGATCGTCTTGCCCGTCAGAGTC 53343 Query 118722 TTTACAAAAATCTGCATG 118739 || || ||||| |||||| Sbjct 53342 TTCACGAAAATTTGCATG 53325 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || || || || ||||| ||||| ||| | ||| ||| ||| || | ||| Sbjct 53757 GTGGAGGGTCGATTCCTTCTGAATATTGTAGTCGGAGAGAGTACGCCCATCTTCCAACTG 53698 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || || || ||||||||||||| || || || || |||||||||||||| ||||| Sbjct 53697 CTTGCCTGCAAAGATGAGACGCTGTTGGTCCGGTGGAATGCCCTCCTTGTCCTGGATTTT 53638 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | ||||| |||||| | ||| ||||| | ||| | || |||||||| Sbjct 53637 AGCCTTCACATTTTCGATGGTGTCGCTAGGCTCAACCTCCAGGGTTATGGTCTTGCCGGT 53578 Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || |||||||| Sbjct 53577 GAGGGTCTTCACGAAGATCTGCAT 53554 Score = 105 bits (116), Expect = 6e-18 Identities = 139/192 (72%), Gaps = 3/192 (2%) Strand=Plus/Minus Query 118548 TCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAG 118607 ||||| |||||||||||||| || || || ||||| ||||| || || ||| || Sbjct 52832 TCTTTCTGAATGTTGTAATCAGACAGCGTACGG---TCCTCAAGCTGCTTGCCGGCGAAG 52776 Query 118608 ATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGT 118667 || ||||||||||| || ||||| || || |||||||| |||||| || || | | Sbjct 52775 ATCAGACGCTGCTGGTCAGGAGGAATTCCTTCCTTGTCCTGAATTTTCGCCTTGACATTT 52716 Query 118668 TCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 118727 || | ||||| | ||| || |||| || | ||||| || || || || || ||| Sbjct 52715 TCAATAGTGTCACTAGGCTCAACTTCGAGCGTGATAGTTTTTCCCGTGAGTGTCTTCACA 52656 Query 118728 AAAATCTGCATG 118739 |||||||||||| Sbjct 52655 AAAATCTGCATG 52644 >seq9079 Length=83715 Score = 140 bits (154), Expect = 3e-28 Identities = 172/233 (74%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || ||||| | || || ||||||||| | || |||||||| ||||||||||| | || Sbjct 2880 CCGCCGCGAAGTCGCAGCACCAAGTGTAGGGTGGACTCTTTCTGAATGTTGTAGT--CTG 2937 Query 118572 ATAGTGCGCG--TATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | |||| ||| ||||||||||| || || || |||||||||||||||| || || | Sbjct 2938 AGAGTGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCAGGTG 2997 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || |||||||||||| || ||| ||| || | |||| ||||| || || | Sbjct 2998 GGATACCCTCCTTGTCTTGGATCTTTGCTTTGACGTTCTCGATCGTGTCACTGGGTTCAA 3057 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 | || | || | ||||||||| |||| ||| || || || ||||||||| || Sbjct 3058 CTTCTAGCGTGATCGTTTTGCCAGTCAAAGTCTTGACGAAGATCTGCATGCCT 3110 Score = 127 bits (140), Expect = 2e-24 Identities = 159/216 (74%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTA--TCC 118586 ||| | ||| | || |||||||| ||||||||||| || | | |||| || ||| Sbjct 3125 CACAAGGTGAAGAGTGGACTCTTTCTGAATGTTGTAGTC--TGAGAGTGTACGGCCGTCC 3182 Query 118587 TCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCT 118646 ||||||||||| ||||| |||||||||||||||| || || || || |||||||||||| Sbjct 3183 TCGAGCTGTTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGTGGAATTCCCTCCTTGTCT 3242 Query 118647 GTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTT 118706 || ||| ||| || | |||| ||||| || || || || | || | ||| Sbjct 3243 TGGATCTTTGCTTTTACGTTCTCGATCGTGTCGCTGGGTTCAACTTCCAGCGTGATCGTC 3302 Query 118707 TTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 ||||| |||| ||| || ||||| ||||||||| || Sbjct 3303 TTGCCAGTCAAAGTCTTGACAAAGATCTGCATGCCT 3338 Score = 118 bits (130), Expect = 9e-22 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| |||||||||||||| || || ||||| || || |||||||| || Sbjct 2682 GTCGACTCCTTTTGAATGTTGTAGTCAGACAGGGTGCGGCCGTCTTCTAGCTGTTTGCCC 2741 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| ||||| |||||||| || || || || |||||||| |||||| || Sbjct 2742 GCAAAGATAAGACGTTGCTGATCAGGTGGGATCCCTTCCTTGTCCTGGATTTTTGCCTTG 2801 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | ||| | |||||| | |||||| |||| || | ||||| ||||| || || Sbjct 2802 ACATTTTCAATGGTGTCACTAGGCTCGACTTCGAGCGTGATGGTTTTACCGGTGAGTGTC 2861 Query 118722 TTTACAAAAATCTGCATG 118739 || ||||||||||||||| Sbjct 2862 TTGACAAAAATCTGCATG 2879 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || ||||| | | || || | ||||| || || || || ||||| ||||| ||| Sbjct 2424 CCACCGCGAAGCCGCAGGACAAGGTGGAGGGTCGATTCCTTCTGAATATTGTAGTCGGAG 2483 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||||||| ||||| | ||| || || || ||||||||||||| || || || || Sbjct 2484 AGAGTGCGCCCGTCCTCCAACTGCTTGCCTGCAAAGATGAGACGCTGTTGGTCCGGTGGA 2543 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 |||||||||||||| ||||| || || | ||||| |||||| | ||| ||| Sbjct 2544 ATGCCCTCCTTGTCCTGGATTTTAGCCTTCACATTTTCGATGGTGTCGCTAGGCTCAACC 2603 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | ||| | || |||||||| || || || || || |||||||| Sbjct 2604 TCTAGGGTTATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 2650 Score = 113 bits (124), Expect = 4e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 118548 TCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAG 118607 ||||| |||||||||||||| || || || ||||| ||||| || || ||| || Sbjct 3372 TCTTTCTGAATGTTGTAATCAGACAGCGTACGGCCGTCCTCAAGCTGCTTGCCGGCGAAG 3431 Query 118608 ATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGT 118667 || ||||||||||| || ||||| || || |||||||| |||||| || || | | Sbjct 3432 ATCAGACGCTGCTGGTCAGGAGGAATTCCTTCCTTGTCCTGAATTTTCGCCTTGACATTT 3491 Query 118668 TCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 118727 || | |||||| | ||| || |||| || | ||||| || || || || || ||| Sbjct 3492 TCAATGGTGTCACTCGGCTCAACTTCGAGCGTGATAGTTTTTCCCGTGAGTGTCTTCACA 3551 Query 118728 AAAATCTGCATG 118739 |||||||||||| Sbjct 3552 AAAATCTGCATG 3563 >seq74841 Length=4471 Score = 118 bits (130), Expect = 9e-22 Identities = 151/208 (73%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || || || || ||||||||||||||| | |||||| ||||| | ||| Sbjct 3192 GTGGAGGGTCGATTCCTTCTGAATGTTGTAATCGGAGAGAGTGCGGCCGTCCTCCAACTG 3133 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || || || ||||||||||||| || || || || |||||||||||||| ||||| Sbjct 3132 CTTGCCTGCAAAGATGAGACGCTGTTGGTCTGGTGGAATGCCCTCCTTGTCCTGGATTTT 3073 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | || || |||||| || ||||||||| | ||| | || |||||||| Sbjct 3072 AGCCTTCACATTTTTGATGGTGTCGCTGGGCTCGACCTCCAGGGTTATGGTCTTGCCGGT 3013 Query 118715 CAGAGTTTTTACAAAAATCTGCATGGCT 118742 || || || || || || |||||| || Sbjct 3012 GAGGGTCTTAACGAAGATTTGCATGCCT 2985 Score = 82.4 bits (90), Expect = 7e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 |||||||| |||||||||||||| || | ||||| || |||||||| || || Sbjct 2957 GTAGACTCCTTTTGAATGTTGTAGTCCGAGAGGGTGCGGCCGTCTTCGAGCTGCTTGCCG 2898 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 ||| | || ||||||||||| || ||||| ||||| || ||||| |||||| Sbjct 2897 GCGAAAATAAGACGCTGCTGGTCCGGAGGAATGCCTTCTTTGTCCTGAATTTT 2845 >seq4323 Length=113087 Score = 118 bits (130), Expect = 9e-22 Identities = 151/208 (73%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || || || || ||||||||||||||| | |||||| ||||| | ||| Sbjct 36919 GTGGAGGGTCGATTCCTTCTGAATGTTGTAATCGGAGAGAGTGCGGCCGTCCTCCAACTG 36978 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || || || ||||||||||||| || || || || |||||||||||||| ||||| Sbjct 36979 CTTGCCTGCAAAGATGAGACGCTGTTGGTCTGGTGGAATGCCCTCCTTGTCCTGGATTTT 37038 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | || || |||||| || ||||||||| | ||| | || |||||||| Sbjct 37039 AGCCTTCACATTTTTGATGGTGTCGCTGGGCTCGACCTCCAGGGTTATGGTCTTGCCGGT 37098 Query 118715 CAGAGTTTTTACAAAAATCTGCATGGCT 118742 || || || || || || |||||| || Sbjct 37099 GAGGGTCTTAACGAAGATTTGCATGCCT 37126 Score = 82.4 bits (90), Expect = 7e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 |||||||| |||||||||||||| || | ||||| || |||||||| || || Sbjct 37154 GTAGACTCCTTTTGAATGTTGTAGTCCGAGAGGGTGCGGCCGTCTTCGAGCTGCTTGCCG 37213 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 ||| | || ||||||||||| || ||||| ||||| || ||||| |||||| Sbjct 37214 GCGAAAATAAGACGCTGCTGGTCCGGAGGAATGCCTTCTTTGTCCTGAATTTT 37266 >seq176411 Length=6678 Score = 116 bits (128), Expect = 3e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || || || || ||||||||||||||| | |||||| ||||| | ||| Sbjct 4822 GTGGAGGGTCGATTCCTTCTGAATGTTGTAATCGGCGAGAGTGCGGCCGTCCTCCAACTG 4881 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || || || ||||||||||||| || || || || |||||||||||||| ||||| Sbjct 4882 CTTGCCTGCAAAGATGAGACGCTGTTGGTCTGGTGGAATGCCCTCCTTGTCCTGGATTTT 4941 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | || || |||||| || ||||||||| | ||| | || |||||||| Sbjct 4942 AGCCTTCACATTTTTGATGGTGTCGCTGGGCTCGACCTCCAGGGTTATGGTCTTGCCGGT 5001 Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || || ||||| Sbjct 5002 GAGGGTCTTAACGAAGATTTGCAT 5025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432798930806128