Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_002794.1 Length=195859 Score E Sequences producing significant alignments: (Bits) Value seq121300 84.2 3e-11 >seq121300 Length=48805 Score = 84.2 bits (92), Expect = 3e-11 Identities = 243/358 (68%), Gaps = 21/358 (6%) Strand=Plus/Plus Query 175016 CCTTCTCTTGCGCC-AGCTTGCCCCACAGCATGAACACGAGGTGCTCGCGCCGTTCCGAG 175074 |||||| ||||| |||| |||||| ||||||||||||| |||| | || | | | Sbjct 8677 CCTTCTTCTGCGCGTAGCT-GCCCCATAGCATGAACACGATCGGCTCCGGTCGCGCGGCG 8735 Query 175075 AGCTGGCGGATCAGCGCGTCGCACAGGGTCTGCCAGCCCAGGTGTTCGTGCGAGCCCGGT 175134 | | ||||||| | ||||||| | ||| ||| || ||| ||||||| | | Sbjct 8736 ATCAGGCGGATGATCGCGTCGGTGAACTTCTCCCACCCACGGTCGCGGTGCGAGGCAGCC 8795 Query 175135 CGTCCGCGGAGGACGGTGAAGACCGAGTTGAGCAGCAGGACCCCTTGC-TCGCACCAGCC 175193 | |||| | || || | || |||||||||||| || || ||| |||| ||||| Sbjct 8796 TGGCCGCTCACCACTGTCAGCACGCTGTTGAGCAGCAGCACACCCTGCGTCGC-CCAGCT 8854 Query 175194 GTCGAGGCAGCCG-GAGCCGGGCATCTCGAAGCCGGGCACGGAGCGCACCAGTTCCTTGA 175252 || ||| ||||| | ||||||| | ||| ||| ||| | | | ||||||||| Sbjct 8855 TTCAAGGAAGCCGTGCGCCGGGC-GCGCGATGCC--GCA-GTCGGTTTCGAGTTCCTTGT 8910 Query 175253 AGATGTTGCGGAG---CGACGGCGGGATCCGGTCGCC-CGTCG--TCGCGAACGCCAGTC 175306 |||||||| ||| || ||||||| ||| |||| | || | ||| ||| | Sbjct 8911 AGATGTTGACGAGGCTCGGCGGCGGG---CGGACGCCGGGGCGGACGGAGAAGCACAGGC 8967 Query 175307 CGTTGGC--GCTGCCG-TCGTGATAGGGATCCTGCCCGATGATGACCACGTGCACGTC 175361 ||| || ||| | | ||||||| || || ||||| | ||| || ||| ||||||| Sbjct 8968 CGTGCGCCTGCTCCGGCCCGTGATACGGGTCTTGCCCCAGGATCACGACGCGCACGTC 9025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 625092753848160