Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq48326 109 4e-19 seq9079 102 6e-17 seq74841 98.7 8e-16 seq4323 98.7 8e-16 seq176411 96.9 3e-15 >seq48326 Length=57257 Score = 109 bits (120), Expect = 4e-19 Identities = 140/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 |||||| |||||||||||||| ||| || |||| || || ||||| || || || Sbjct 53517 CTCCTTTTGAATGTTGTAGTCAGACAGGGTACGGCCGTCTTCTAGCTGTTTGCCCGCAAA 53458 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 || | ||||| || || || || | || ||||||||| ||||| ||| || Sbjct 53457 GATAAGACGCTGCTGATCAGGTGGAATCCCTTCCTTGTCCTGGATTTTCGCCTTCACGTT 53398 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | |||| | ||| ||||||| ||| |||||||||||||||||||||||||| Sbjct 53397 CTCAATCGTGTCACTCGGCTCGACCTCCAGGGTGATCGTCTTGCCCGTCAGAGTCTTCAC 53338 Query 45325 AAAGATTTGCATG 45337 || ||||||||| Sbjct 53337 GAAAATTTGCATG 53325 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 ||||||||||| ||||||||| || || | || |||| || || || || || Sbjct 53744 TCCTTCTGAATATTGTAGTCGGAGAGAGTACGCCCATCTTCCAACTGCTTGCCTGCAAAG 53685 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 || | ||||||||||| || || | |||||||||||| ||||| ||| || Sbjct 53684 ATGAGACGCTGTTGGTCCGGTGGAATGCCCTCCTTGTCCTGGATTTTAGCCTTCACATTT 53625 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | | |||| | | ||| ||||||| ||| || |||||||| || || |||||||| Sbjct 53624 TCGATGGTGTCGCTAGGCTCAACCTCCAGGGTTATGGTCTTGCCGGTGAGGGTCTTCACG 53565 Query 45326 AAGATTTGCAT 45336 ||||| ||||| Sbjct 53564 AAGATCTGCAT 53554 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/208 (70%), Gaps = 3/208 (1%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || || || || |||||||||||||| || ||| || ||| || || || Sbjct 52845 GTGAAGGGTACTTTCTTTCTGAATGTTGTAATCAGACAGCGTACG---GTCCTCAAGCTG 52789 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || |||||||| |||| ||||| ||||| ||||| | || ||||||||| |||||| Sbjct 52788 CTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGAGGAATTCCTTCCTTGTCCTGAATTTT 52729 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | |||| | | ||| || || | || || || || ||||| Sbjct 52728 CGCCTTGACATTTTCAATAGTGTCACTAGGCTCAACTTCGAGCGTGATAGTTTTTCCCGT 52669 Query 45313 CAGAGTCTTCACAAAGATTTGCATGTTG 45340 || ||||||||||| || |||||| || Sbjct 52668 GAGTGTCTTCACAAAAATCTGCATGATG 52641 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193 || || ||| ||||||||||||||||||||| ||| ||| |||| || || || Sbjct 53300 TGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGATAGTGTGCGGCCGTCTTCGAGCTGC 53241 Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253 ||||||||||| || | ||||| || || ||||| | || ||||||||| || ||| Sbjct 53240 TTTCCGGCGAAGATGAGACGCTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGGATCTTT 53181 Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313 ||| || | | | |||| | ||| || || | || || || || || || Sbjct 53180 GCCTTGACATTTTCAATGGTGTCACTGGGCTCGACTTCGAGCGTGATGGTTTTACCGGTG 53121 Query 45314 AGAGTCTTCACAAAGATTTGCATG 45337 || ||||| ||||| || |||||| Sbjct 53120 AGTGTCTTGACAAAAATCTGCATG 53097 >seq9079 Length=83715 Score = 102 bits (112), Expect = 6e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 ||||||||||| ||||||||| || ||| |||| |||| || || || || || Sbjct 2460 TCCTTCTGAATATTGTAGTCGGAGAGAGTGCGCCCGTCCTCCAACTGCTTGCCTGCAAAG 2519 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 || | ||||||||||| || || | |||||||||||| ||||| ||| || Sbjct 2520 ATGAGACGCTGTTGGTCCGGTGGAATGCCCTCCTTGTCCTGGATTTTAGCCTTCACATTT 2579 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | | |||| | | ||| ||||| | ||| || |||||||| || || |||||||| Sbjct 2580 TCGATGGTGTCGCTAGGCTCAACCTCTAGGGTTATGGTCTTGCCGGTGAGGGTCTTCACG 2639 Query 45326 AAGATTTGCAT 45336 ||||| ||||| Sbjct 2640 AAGATCTGCAT 2650 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || || || || |||||||||||||| || ||| || |||| || || || Sbjct 3359 GTGAAGGGTACTTTCTTTCTGAATGTTGTAATCAGACAGCGTACGGCCGTCCTCAAGCTG 3418 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || |||||||| |||| ||||| ||||| ||||| | || ||||||||| |||||| Sbjct 3419 CTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGAGGAATTCCTTCCTTGTCCTGAATTTT 3478 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | |||| | ||| || || | || || || || ||||| Sbjct 3479 CGCCTTGACATTTTCAATGGTGTCACTCGGCTCAACTTCGAGCGTGATAGTTTTTCCCGT 3538 Query 45313 CAGAGTCTTCACAAAGATTTGCATGTTG 45340 || ||||||||||| || |||||| || Sbjct 3539 GAGTGTCTTCACAAAAATCTGCATGATG 3566 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || ||| ||| ||||||||||||||||| ||| ||| |||| || Sbjct 2898 ACCAAGTGTAGGGTGGACTCTTTCTGAATGTTGTAGTCTGAGAGTGTGCGGCCGTCCTCG 2957 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || ||||| || || | ||||| ||||| || || | |||||||||||| Sbjct 2958 AGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTCTTGG 3017 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || ||| || || | | | |||| | || || || | || ||||| ||| Sbjct 3018 ATCTTTGCTTTGACGTTCTCGATCGTGTCACTGGGTTCAACTTCTAGCGTGATCGTTTTG 3077 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || |||| |||||| || ||||| |||||| Sbjct 3078 CCAGTCAAAGTCTTGACGAAGATCTGCATG 3107 >seq74841 Length=4471 Score = 98.7 bits (108), Expect = 8e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 ||||||||||||||||| ||| || ||| |||| |||| || || || || || Sbjct 3179 TCCTTCTGAATGTTGTAATCGGAGAGAGTGCGGCCGTCCTCCAACTGCTTGCCTGCAAAG 3120 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 || | ||||||||||| || || | |||||||||||| ||||| ||| || Sbjct 3119 ATGAGACGCTGTTGGTCTGGTGGAATGCCCTCCTTGTCCTGGATTTTAGCCTTCACATTT 3060 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | |||| | ||| ||||||| ||| || |||||||| || || ||||| || Sbjct 3059 TTGATGGTGTCGCTGGGCTCGACCTCCAGGGTTATGGTCTTGCCGGTGAGGGTCTTAACG 3000 Query 45326 AAGATTTGCATG 45337 |||||||||||| Sbjct 2999 AAGATTTGCATG 2988 >seq4323 Length=113087 Score = 98.7 bits (108), Expect = 8e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 ||||||||||||||||| ||| || ||| |||| |||| || || || || || Sbjct 36932 TCCTTCTGAATGTTGTAATCGGAGAGAGTGCGGCCGTCCTCCAACTGCTTGCCTGCAAAG 36991 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 || | ||||||||||| || || | |||||||||||| ||||| ||| || Sbjct 36992 ATGAGACGCTGTTGGTCTGGTGGAATGCCCTCCTTGTCCTGGATTTTAGCCTTCACATTT 37051 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | |||| | ||| ||||||| ||| || |||||||| || || ||||| || Sbjct 37052 TTGATGGTGTCGCTGGGCTCGACCTCCAGGGTTATGGTCTTGCCGGTGAGGGTCTTAACG 37111 Query 45326 AAGATTTGCATG 45337 |||||||||||| Sbjct 37112 AAGATTTGCATG 37123 >seq176411 Length=6678 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 ||||||||||||||||| ||| || ||| |||| |||| || || || || || Sbjct 4835 TCCTTCTGAATGTTGTAATCGGCGAGAGTGCGGCCGTCCTCCAACTGCTTGCCTGCAAAG 4894 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 || | ||||||||||| || || | |||||||||||| ||||| ||| || Sbjct 4895 ATGAGACGCTGTTGGTCTGGTGGAATGCCCTCCTTGTCCTGGATTTTAGCCTTCACATTT 4954 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | |||| | ||| ||||||| ||| || |||||||| || || ||||| || Sbjct 4955 TTGATGGTGTCGCTGGGCTCGACCTCCAGGGTTATGGTCTTGCCGGTGAGGGTCTTAACG 5014 Query 45326 AAGATTTGCAT 45336 ||||||||||| Sbjct 5015 AAGATTTGCAT 5025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394135874636764