Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq9079 96.9 3e-15 seq48326 86.0 5e-12 >seq9079 Length=83715 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24831 CATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG 24890 ||||||||| ||||| || || | ||||| ||||| || || |||| ||||| | || Sbjct 2879 CATGCAGATTTTTGTCAAGACACTCACCGGTAAAACCATCACGCTCGAAGTCGAGCCTAG 2820 Query 24891 CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCA 24950 |||| | |||| ||| |||| |||||| | || ||||| | || ||| || Sbjct 2819 TGACACCATTGAAAATGTCAAGGCAAAAATCCAGGACAAGGAAGGGATCCCACCTGATCA 2760 Query 24951 GCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAG 25010 ||||||| | || | |||||||||||| || ||||| | || || || |||| Sbjct 2759 GCAACGTCTTATCTTTGCGGGCAAACAGCTAGAAGACGGCCGCACCCTGTCTGACTACAA 2700 Query 25011 CATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 ||| || || ||| | || ||||| | || | || |||||||||| Sbjct 2699 CATTCAAAAGGAGTCGACCCTTCACCTTGTCCTCCGGCTGCGCGGAGG 2652 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 24828 CATCATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATC 24887 |||||||||||| ||||| || || | || || ||||| || || |||| || || | Sbjct 3566 CATCATGCAGATTTTTGTGAAGACACTCACGGGAAAAACTATCACGCTCGAAGTTGAGCC 3507 Query 24888 GAGCGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGA 24947 ||| |||| | |||| ||| |||| |||||| | || ||||| | || ||| Sbjct 3506 GAGTGACACCATTGAAAATGTCAAGGCGAAAATTCAGGACAAGGAAGGAATTCCTCCTGA 3447 Query 24948 CCAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTA 25007 |||||| ||| | || | || ||||| || || || || | || || ||||| Sbjct 3446 CCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGTACGCTGTCTGATTA 3387 Query 25008 CAGCATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 || ||| |||||||| || ||||| | ||| |||| | || ||||| Sbjct 3386 CAACATTCAGAAAGAAAGTACCCTTCACCTTGTGCTACGGCTTCGTGGAGG 3336 >seq48326 Length=57257 Score = 86.0 bits (94), Expect = 5e-12 Identities = 159/231 (69%), Gaps = 3/231 (1%) Strand=Plus/Plus Query 24828 CATCATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATC 24887 |||||||||||| ||||| || || | || || ||||| || || |||| || || | Sbjct 52641 CATCATGCAGATTTTTGTGAAGACACTCACGGGAAAAACTATCACGCTCGAAGTTGAGCC 52700 Query 24888 GAGCGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGA 24947 || |||| | | |||| ||| |||| |||||| | || ||||| | || ||| Sbjct 52701 TAGTGACACTATTGAAAATGTCAAGGCGAAAATTCAGGACAAGGAAGGAATTCCTCCTGA 52760 Query 24948 CCAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTA 25007 |||||| ||| | || | || ||||| || || || || || | || || ||||| Sbjct 52761 CCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTTGAGGA--CCGT-ACGCTGTCTGATTA 52817 Query 25008 CAGCATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 || ||| |||||||| || ||||| | ||| |||| | || ||||| Sbjct 52818 CAACATTCAGAAAGAAAGTACCCTTCACCTTGTGCTACGGCTTCGTGGAGG 52868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 417309446161280