Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq48326 127 2e-24 seq9079 116 3e-21 seq188574 98.7 9e-16 seq17548 98.7 9e-16 seq137346 89.7 5e-13 >seq48326 Length=57257 Score = 127 bits (140), Expect = 2e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||||||||| ||||||||||| ||||| ||||||||| | || || || ||| Sbjct 53325 CATGCAAATTTTCGTGAAGACTCTGACGGGCAAGACGATCACCCTGGAGGTCGAGCCGAG 53384 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | || || || ||| |||||||||||| | || || || || Sbjct 53385 TGACACGATTGAGAACGTGAAGGCGAAAATCCAGGACAAGGAAGGGATTCCACCTGATCA 53444 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || || || ||||||||| | |||||| || || || || || Sbjct 53445 GCAGCGTCTTATCTTTGCGGGCAAACAGCTAGAAGACGGCCGTACCCTGTCTGACTACAA 53504 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||||||| || ||||| ||||| || || || Sbjct 53505 CATTCAAAAGGAGTCGACCCTTCACCTTGTCCT 53537 Score = 118 bits (130), Expect = 9e-22 Identities = 158/219 (72%), Gaps = 3/219 (1%) Strand=Plus/Plus Query 31186 ATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGA 31245 ||| | |||||| ||||| || ||||| || || || ||||| ||||| |||| ||||| Sbjct 52638 ATCCATCATGCAGATTTTTGTGAAGACACTCACGGGAAAAACTATCACGCTCGAAGTTGA 52697 Query 31246 ACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCC 31305 || |||| | | |||| ||||| || ||| |||||||||||| | || || Sbjct 52698 GCCTAGTGACACTATTGAAAATGTCAAGGCGAAAATTCAGGACAAGGAAGGAATTCCTCC 52757 Query 31306 CGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGA 31365 |||||||||||||| || ||||| ||||| ||| | || ||| | || || || Sbjct 52758 TGACCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTTGAGGACCGT---ACGCTGTCTGA 52814 Query 31366 TTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| |||||||| |||||| || ||||| || || || Sbjct 52815 TTACAACATTCAGAAAGAAAGTACCCTTCACCTTGTGCT 52853 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || ||||| || || ||| | || ||||| || | Sbjct 53554 ATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATAACCCTGGAGGTTGAGCCTAGC 53613 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||||| || || | ||| ||||||||| ||| | || || ||||| Sbjct 53614 GACACCATCGAAAATGTGAAGGCTAAAATCCAGGACAAGGAGGGCATTCCACCGGACCAA 53673 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || || || ||||| ||||||||||| ||| | ||| || || Sbjct 53674 CAGCGTCTCATCTTTGCAGGCAAGCAGTTGGAAGATGGGCGTACTCTCTCCGACTACAAT 53733 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || |||||||| || || || || || Sbjct 53734 ATTCAGAAGGAATCGACCCTCCACCTTGTCCT 53765 Score = 98.7 bits (108), Expect = 9e-16 Identities = 154/216 (71%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| ||||| || ||||| || || || ||||| ||||| |||| || || || Sbjct 53097 CATGCAGATTTTTGTCAAGACACTCACCGGTAAAACCATCACGCTCGAAGTCGAGCCCAG 53156 Query 31252 CGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 |||| | |||| ||||| || ||| | ||||||||||||| | || || || | Sbjct 53157 TGACACCATTGAAAATGTCAAGGCAAAGA-TCCAGGACAAGGAAGGCATTCCTCCGGATC 53215 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC--TCTATGACTATGAGCGATTA 31368 |||||||||| || ||||| || || ||| | |||||| | ||||| || || Sbjct 53216 AGCAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAAGACGGCCGCACACTAT--CTGACTA 53273 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||||||| || || || || |||||||| || || Sbjct 53274 CAACATTCAGAAGGAGTCCACCCTTCATCTCGTCCT 53309 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || |||||| |||| ||||| || ||||| | || |||||||| Sbjct 52869 CATGCAGATCTTTGTCAAGACTTTGACTGGCAAGACAATCACGCTGGAAGTTGAACCCAG 52928 Query 31252 CGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 ||||| |||| | || ||| || ||| | |||||||| || | || || |||| Sbjct 52929 CGACACGATCGAGAACGTAAAAGCAAAGA-TCCAAGACAAGGAGGGAATTCCACCAGACC 52987 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370 |||||||||| || || || ||||| ||| | || ||| || | || || | Sbjct 52988 AGCAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACACTTTCGGACTACA 53047 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||| || ||||| || || || || |||| || |||| | ||||| Sbjct 53048 ACATCCAGAAAGAGTCCACCCTCCACTTGGTGCTGCGACTTCGTGGCGG 53096 >seq9079 Length=83715 Score = 116 bits (128), Expect = 3e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 31186 ATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGA 31245 ||| | |||||| ||||| || ||||| || || || ||||| ||||| |||| ||||| Sbjct 3569 ATCCATCATGCAGATTTTTGTGAAGACACTCACGGGAAAAACTATCACGCTCGAAGTTGA 3510 Query 31246 ACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCC 31305 ||| |||| | |||| ||||| || ||| |||||||||||| | || || Sbjct 3509 GCCGAGTGACACCATTGAAAATGTCAAGGCGAAAATTCAGGACAAGGAAGGAATTCCTCC 3450 Query 31306 CGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGA 31365 |||||||||||||| || ||||| ||||| ||| | || ||| || || || Sbjct 3449 TGACCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGTACGCTGTCTGA 3390 Query 31366 TTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| |||||||| |||||| || ||||| || || || Sbjct 3389 TTACAACATTCAGAAAGAAAGTACCCTTCACCTTGTGCT 3351 Score = 111 bits (122), Expect = 1e-19 Identities = 157/216 (73%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || |||||| |||| ||||| |||||||| | || |||||||| Sbjct 3335 CATGCAGATCTTTGTCAAGACTTTGACTGGCAAGACGATCACGCTGGAAGTTGAACCCAG 3276 Query 31252 CGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 ||||| |||| | || ||| || ||| | |||||||| || | || || |||| Sbjct 3275 CGACACGATCGAGAACGTAAAAGCAAAGA-TCCAAGACAAGGAGGGAATTCCACCAGACC 3217 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC--TCTATGACTATGAGCGATTA 31368 |||||||||| || || |||||||||||| | || ||| | ||| | | || || Sbjct 3216 AGCAGCGTCTCATCTTTGCTGGCAAACAGCTCGAGGACGGCCGTACACTCTCA--GACTA 3159 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||||||| ||||| || |||||||| || || || Sbjct 3158 CAACATTCAGAAAGAGTCCACTCTTCACCTTGTGCT 3123 Score = 107 bits (118), Expect = 2e-18 Identities = 165/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| |||||| |||| |||||||||||||| | || |||||||| Sbjct 3107 CATGCAGATCTTCGTCAAGACTTTGACTGGCAAAACGATCACGCTAGAAGTTGAACCCAG 3048 Query 31252 CGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 |||| |||| | |||||| || ||| | |||||||| || | || || |||| Sbjct 3047 TGACACGATCGAGAACGTCAAAGCAAAGA-TCCAAGACAAGGAGGGTATCCCACCTGACC 2989 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC--TCTATGACTATGAGCGATTA 31368 |||||||||| || || || ||||| ||| | || ||| | ||| | | || || Sbjct 2988 AGCAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACACTCTCA--GACTA 2931 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||||||| ||||| || || || || |||| || |||| | ||||| Sbjct 2930 CAACATTCAGAAAGAGTCCACCCTACACTTGGTGCTGCGACTTCGCGGCGG 2880 Score = 100 bits (110), Expect = 3e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| ||||| || ||||| || || || ||||| ||||| |||| || || || Sbjct 2879 CATGCAGATTTTTGTCAAGACACTCACCGGTAAAACCATCACGCTCGAAGTCGAGCCTAG 2820 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | |||| ||||| | ||| |||||||||||| | || || || || Sbjct 2819 TGACACCATTGAAAATGTCAAGGCAAAAATCCAGGACAAGGAAGGGATCCCACCTGATCA 2760 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| ||||| || || || ||||||||| | |||||| || || || || || Sbjct 2759 GCAACGTCTTATCTTTGCGGGCAAACAGCTAGAAGACGGCCGCACCCTGTCTGACTACAA 2700 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||||||| || ||||| ||||| || || || Sbjct 2699 CATTCAAAAGGAGTCGACCCTTCACCTTGTCCT 2667 >seq188574 Length=9004 Score = 98.7 bits (108), Expect = 9e-16 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 |||||||| || |||||||| | | ||||| || || ||||| ||||| || ||| Sbjct 8555 ACCTCGTCCGGAGATGTGTACTCCGCCACCTCGGTGCACAGGTTGCTGCACTTGATGGTG 8614 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 || | || |||| || || |||||||| | ||||||||| |||||||| || ||| Sbjct 8615 CCAAGGTTTTTCTGATTAGACTTGCGATTGCAGGCATCCTTGTACAGCATGTATGGTGTG 8674 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGC 23196 |||||||| | ||| ||||| | ||| || Sbjct 8675 CCCGTCTCAATCTGAGACTCAAGGATGGC 8703 >seq17548 Length=139630 Score = 98.7 bits (108), Expect = 9e-16 Identities = 132/184 (72%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 23312 GGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATC 23371 ||||||||||| ||| | || | || ||||| |||| || || || || ||| Sbjct 1887 GGACACATGAGCGACCAGACACCATCTTCCTCCACGCGCTTCATGAACAGGTCTGGGATC 1946 Query 23372 CATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAA 23431 || ||||| || |||| || || || || ||||||||||| |||||||| |||| Sbjct 1947 CAGAGAGCATAAAACAAGTCCCGAGCTCGAGTTTCCTCTTTGCCCGTGTTCTTCTTCAGC 2006 Query 23432 TCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGT 23491 || | || || || | ||| || ||||| ||||| ||||| | |||||| || ||||| Sbjct 2007 TCAAGGAACTCGAAGATGTCTGCGTGCCAGGGCTCCAGGTACATGGCAAAAGCTCCCGGC 2066 Query 23492 CTCT 23495 |||| Sbjct 2067 CTCT 2070 >seq137346 Length=1634 Score = 89.7 bits (98), Expect = 5e-13 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 23357 AAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCG 23416 || || || || ||||| ||||| || |||| || || || || ||||||||||| Sbjct 1633 AACAGGTCTGGGATCCAGAGAGCATAAAACAAGTCCCGAGCTCGAGTTTCCTCTTTGCCC 1574 Query 23417 GTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACG 23476 |||||||| |||| || | || || || | ||| || ||||| ||||| ||||| | | Sbjct 1573 GTGTTCTTCTTCAGCTCAAGGAACTCGAAGATGTCTGCGTGCCAGGGCTCCAGGTACATG 1514 Query 23477 GCAAACGCGCCCGGTCTCT 23495 ||||| || ||||| |||| Sbjct 1513 GCAAAAGCTCCCGGCCTCT 1495 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444679376345280