Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_003309.1 Length=53373 Score E Sequences producing significant alignments: (Bits) Value seq115180 825 0.0 seq121864 86.0 2e-12 seq121353 86.0 2e-12 >seq115180 Length=148627 Score = 825 bits (914), Expect = 0.0 Identities = 990/1331 (74%), Gaps = 27/1331 (2%) Strand=Plus/Plus Query 33316 TGAACCGCACCGGGAATCGTGGAGGCTGGTTGGTTTAAGTTAATGCGGACACGTCAGCGG 33375 |||| || |||||||||| ||||||| |||||| |||| || ||| | | ||| Sbjct 36304 TGAATAGCCCCGGGAATCGAGGAGGCTATTTGGTTAAAGT-AACGCGT-----TGATCGG 36357 Query 33376 CAT---TTCTGAGTT-GTCTG-TAGTAGTTTGCCTCAGCTTCAGCGGGCGGGATATAGCC 33430 || ||| || | ||| | |||||| | || || | || || || ||||| || Sbjct 36358 CACAGATTCAGATTGAGTCCGATAGTAGGCCTCTTCCGCCTGCGCAGGAGGAATATACCC 36417 Query 33431 GAGCGGTTCCATCAGCCGATGATGGTTGTACCAGGCGACCCATTCCAGCGTTGCCAGTTC 33490 || | | | ||| || |||||||||||| |||||||||||||||||||||||| || Sbjct 36418 GATGGACCCGAGCAGACGTTGATGGTTGTACTAGGCGACCCATTCCAGCGTTGCCAACTC 36477 Query 33491 GACGGATTCCCTCGTTTTCCAAGGGGCGCGCCGATGAATCAGTTCCGTCTTGTACAGGCC 33550 |||| |||| |||||||| || || || ||||| |||| ||| | ||||||||| || Sbjct 36478 CACGGCAGCCCTGGTTTTCCAGGGCGCTCGGCGATGGATCAATTCGGCCTTGTACAGCCC 36537 Query 33551 GTTGATCGTTTCGGCCAGCGCATTGTCGTAGCTGTCGCCCCGGCTGCCGACTGAGGGCTC 33610 |||||| ||||| ||||| || ||||| |||||||| || ||||||||||| || ||||| Sbjct 36538 GTTGATGGTTTCAGCCAGGGCGTTGTCATAGCTGTCCCCTCGGCTGCCGACCGACGGCTC 36597 Query 33611 GATGCCGGCCTCAGCCAGCCGTTCGCTGTAGCGAATGCTGACGTATTGAGACCCCCTGTC 33670 |||||| ||||| ||||| |||||| | ||||| ||| |||||||| || || | || Sbjct 36598 GATGCCTGCCTCGGCCAGACGTTCGGTATAGCGGATGGACACGTATTGCGATCCTCGATC 36657 Query 33671 GGAATGATGAATCAAAGTCCCGTCCTCGCCCGGTTGGCGGGCGTACAGCGCTTGTTCAAG 33730 |||||| ||| ||| || ||| || | ||| | ||||| || ||||| || Sbjct 36658 GGAATGGTGAGTCAGGGTG------TCGGTGGGACGCCGGTCATACAGGGCCTGTTCCAG 36711 Query 33731 TGCATCCAGAACAAAGTCCGTGGTCATCGACGAGCTGACCCGCCAGCCAACAATACGGCG 33790 ||||||| || ||||| || |||| | ||| || |||||||| || || ||||| Sbjct 36712 GGCATCCAACACGAAGTCTGTACTCATGGTGTTGCTCACGCGCCAGCCGACGATGCGGCG 36771 Query 33791 GGCGAACACGTCGATCACGAATGCCACGTACAGCCAGCCTTGCCATGTCGAGACATACGT 33850 |||||| || || || ||||| ||||| ||||||||||||||||| ||||| || || || Sbjct 36772 GGCGAATACATCAATGACGAAGGCCACATACAGCCAGCCTTGCCAGGTCGACACGTAGGT 36831 Query 33851 AAAATCCGACACCCAGAGCTGATTCGGTCGGTCAGCCTTGAACTGCCGGTTGACTCGGTC 33910 || ||||| ||||| | |||||| || | |||||| | ||| || || ||||| || || Sbjct 36832 GAAGTCCGAGACCCATAACTGATTGGGCCTGTCAGCGTGGAAGTGGCGATTGACGCGATC 36891 Query 33911 CAGCGGGCGCGGC-GCGGTCACATCGGTAATCGTCGTGCGAACACGCTTACCGCGAACTG 33969 |||||||| | | ||| | | |||| ||| || ||||| || ||||| || ||| Sbjct 36892 CAGCGGGCAGGCCTGCGAAC-CGTCGGCAATGGTAGTGCGCACCCGCTTGCCCCGACGCA 36950 Query 33970 CGCCACGCAAGCCCTGCAGCTTCATCAACCGTCCGACCGTGCAGCGTGCCACCGTAATGC 34029 |||| |||| ||| | | ||||| ||| ||||||||||||| ||||| | ||||| Sbjct 36951 CGCCCTGCAATCCCAGGCGACGCATCAGACGTTCGACCGTGCAGCGGGCCACGGCAATGC 37010 Query 34030 CTTCCCGGTTCATCTGCTTCCAGACCTTCGGCACGCCGTAGACCTGCATGTTGGCCTGCC 34089 |||| || | || || | ||||||||| | ||||||||||||||||||||||| |||| Sbjct 37011 CTTCGCGCTGCAGTTGATGCCAGACCTTGCGTACGCCGTAGACCTGCATGTTGGCTTGCC 37070 Query 34090 AGACACGCTTGATCTCCGGTTGCAAAAGCTCATCGCGTTTCGCGCGGGCGCAGCGT--TT 34147 |||||||| ||||| | ||| ||| ||||| | ||| || | ||| || Sbjct 37071 AGACACGCCGAATCTCTGCCACCAAGCCCTCGTCGCGCTGGCTGCGCGCACTGCGCAGTT 37130 Query 34148 CGACGGATCGCGAAGTTGTGCTGCATGGCGTCGGTAGCCCGACGGGGCAATCCGCAAGAC 34207 | ||||| || | | || |||| || || || |||| ||||||| | ||| || Sbjct 37131 C--CGGATGTCGTTGGCGGGCGGCATAACGCCGATACGCCGATGGGGCAACCTGCAGCAC 37188 Query 34208 CTTGCAGATCGGCTCGACCCCGAAGGTGTCGCGATGCTGATCAATGAAGGCCTTCAGGAC 34267 |||||||||||||||||||||| || |||| || ||| | || || |||| || | | Sbjct 37189 CTTGCAGATCGGCTCGACCCCGTAGATGTCCCGGTGCCGGTCGATATAGGCGTTTACTTC 37248 Query 34268 TTGAAACGGCGGTCGAGCTCCGCCTGAGCGAAAAACGCGCTCGCCAGTTTGAGAATCTCG 34327 || | |||||||||| ||||||| |||||||| || || ||| || || |||||| Sbjct 37249 TTCAGTTCGCGGTCGAGCGCCGCCTGGGCGAAAAAAGCACTGGCCGACTTCAGGATCTCG 37308 Query 34328 TTGGTCCGGCGCAGTTCCTTGACCTCGCGCTCCAAGGCTTTGATGCGTTCACGCTCGGCC 34387 |||| |||||||||||||||| |||||| |||| ||| || ||||| || || || Sbjct 37309 TTGGCCCGGCGCAGTTCCTTGTTCTCGCGTTCCAGGGCCTTCATGCGCTCGCGTTCACTG 37368 Query 34388 GTACTCACGCCATCGCGCTCTCCACGGTCGACCTCGTTGCGCTTAACCCAATCCAACAGC 34447 || ||| |||||| ||| || | ||||| |||| ||||||| ||||| |||| |||| Sbjct 37369 GTTGTCATGCCATCACGCATGCCGCTGTCGATCTCGCTGCGCTTGACCCAGTCCAGCAGC 37428 Query 34448 GTCTGCGGCGTGCAGCCGATCATCGGCGCAATCGATTCGACGGCCGCCCACATCGACGGG 34507 || ||| ||| || ||| |||||||||| || |||||||| ||||||| |||||| Sbjct 37429 GTGGCCGGTACGCAACCAATCTTCGGCGCAATGGACTCGACGGCTGCCCACAGCGACGGA 37488 Query 34508 TGCTCGCTACGCTGCTCGCGTACCAGGCGCACTGCGCGCTCTCGGACTTCCGGGGAAAAC 34567 | ||||| ||| ||||| | |||||||| | ||||| || |||||||| ||||||||| Sbjct 37489 TACTCGCCACGATGCTCCTGCACCAGGCGTATGGCGCGTTCACGGACTTCAGGGGAAAAC 37548 Query 34568 -TGCTTGGCTT-CTGTTCATGGCTCCATTCTCTCAGAG-TTGGAGCCTCCAC-AAACTCG 34623 ||||| |||| || | |||||||||| ||||| || |||||||||| | |||| || Sbjct 37549 TTGCTTTGCTTGCTCATAGTGGCTCCATTTTCTCAAAGAATGGAGCCTCCTCAAAACCCG 37608 Query 34624 GGGCGGTTCAG 34634 |||| ||||| Sbjct 37609 GGGCTATTCAG 37619 >seq121864 Length=8002 Score = 86.0 bits (94), Expect = 2e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 44410 TGCTCGCCGGCAGTCGGCCGGGCGACGTCGTGTTCGATCCGTTCTTCGGCAGCGGCACGA 44469 |||||||| ||| |||||||||||| ||| |||||||||||||||||| ||||||| Sbjct 7051 TGCTCGCCTGCACCAAGCCGGGCGACGTGGTGCTCGATCCGTTCTTCGGCACGGGCACGA 7110 Query 44470 CCGGACAAGTAGCGCAGCGCCTCGGCCGCCGTTTCATCGGCTGCGAACTCAACCCGGACT 44529 |||| || ||| |||| ||||| || | | ||||| ||| | | | |||| || Sbjct 7111 CCGGCGCGGTGGCGAAGCGGCTCGGGCGGCACTGGATCGGGATCGAGCGCGAGCCGGGCT 7170 Query 44530 AT 44531 || Sbjct 7171 AT 7172 >seq121353 Length=9894 Score = 86.0 bits (94), Expect = 2e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 44410 TGCTCGCCGGCAGTCGGCCGGGCGACGTCGTGTTCGATCCGTTCTTCGGCAGCGGCACGA 44469 |||||||| ||| |||||||||||| ||| |||||||||||||||||| ||||||| Sbjct 833 TGCTCGCCTGCACCAAGCCGGGCGACGTGGTGCTCGATCCGTTCTTCGGCACGGGCACGA 774 Query 44470 CCGGACAAGTAGCGCAGCGCCTCGGCCGCCGTTTCATCGGCTGCGAACTCAACCCGGACT 44529 |||| || ||| |||| ||||| || | | ||||| ||| | | | |||| || Sbjct 773 CCGGCGCGGTGGCGAAGCGGCTCGGGCGGCACTGGATCGGGATCGAGCGCGAGCCGGGCT 714 Query 44530 AT 44531 || Sbjct 713 AT 712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 170276617404680