Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_003521.1 Length=241087 Score E Sequences producing significant alignments: (Bits) Value seq6145 84.2 3e-11 >seq6145 Length=211845 Score = 84.2 bits (92), Expect = 3e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 77360 CCAGCAGGGTGGAGTAGCACAGGTTGTGGGCCATGATGATGGAGGGGTAGAGGCTGGCGA 77419 |||| | ||| | ||||||||||||||| ||||| |||||||| ||||| ||| || || Sbjct 175199 CCAGTACGGTCGTGTAGCACAGGTTGTGTGCCATCATGATGGACGGGTACAGGGAGGAGA 175140 Query 77420 AGTCGAAGACCGCCACGGGGTCGTTGTAGTAGCCCACCACGGGCTCGAAGACGGTGGCAC 77479 |||||| ||| | ||| | ||||| ||||| || ||||| | || ||||| | Sbjct 175139 AGTCGAGCGTCGCAATGGGCACACTGTAGAAGCCCTTGACCGGCTCAATCACTGTGGCRC 175080 Query 77480 CCT 77482 ||| Sbjct 175079 CCT 175077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 769469423482080