Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq48326 116 4e-21 seq9079 111 2e-19 seq176411 100 3e-16 seq74841 100 3e-16 seq4323 95.1 1e-14 >seq48326 Length=57257 Score = 116 bits (128), Expect = 4e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTG 139620 ||||| || ||||| ||||||||||| || || || || | |||||| ||||| Sbjct 53529 GTGAAGGGTCGACTCCTTTTGAATGTTGTAGTCAGACAGGGTACGGCCGTCTTCTAGCTG 53470 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 ||| || ||| |||| ||||| |||||||| || || || ||||| ||||| |||||| Sbjct 53469 TTTGCCCGCAAAGATAAGACGCTGCTGATCAGGTGGAATCCCTTCCTTGTCCTGGATTTT 53410 Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 || | | || | ||||| | ||||| ||||| | ||| | ||||||||| || Sbjct 53409 CGCCTTCACGTTCTCAATCGTGTCACTCGGCTCGACCTCCAGGGTGATCGTCTTGCCCGT 53350 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 || || || ||||| |||||||| Sbjct 53349 CAGAGTCTTCACGAAAATTTGCAT 53326 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| || ||||| || |||||||| || || | ||||| |||||||||||| Sbjct 53300 TGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGATAGTGTGCGGCCGTCTTCGAGCTGC 53241 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || || || |||| ||||| |||||||| ||||| |||||||| ||||| ||| ||| Sbjct 53240 TTTCCGGCGAAGATGAGACGCTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGGATCTTT 53181 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 || | | ||| | ||||| ||||||| || || | || | || || ||||| Sbjct 53180 GCCTTGACATTTTCAATGGTGTCACTGGGCTCGACTTCGAGCGTGATGGTTTTACCGGTG 53121 Query 139742 AACGTTTTTACGAATATTTGCAT 139764 | || || || || || ||||| Sbjct 53120 AGTGTCTTGACAAAAATCTGCAT 53098 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 |||||||| || | |||| || | ||| | || || || || ||||| || || ||| Sbjct 53783 TGGCCGCCACGAAGCCGCAGGACAAGGTGGAGGGTCGATTCCTTCTGAATATTGTAGTCG 53724 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 | || | | ||||| | ||| || || ||| |||| ||||| || || || || Sbjct 53723 GAGAGAGTACGCCCATCTTCCAACTGCTTGCCTGCAAAGATGAGACGCTGTTGGTCCGGT 53664 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714 || ||||| || ||||| |||||| || | | ||| | |||||| | ||||| Sbjct 53663 GGAATGCCCTCCTTGTCCTGGATTTTAGCCTTCACATTTTCGATGGTGTCGCTAGGCTCA 53604 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| | ||| | ||||||||||| | || || ||||| || ||||| Sbjct 53603 ACCTCCAGGGTTATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 53554 >seq9079 Length=83715 Score = 111 bits (122), Expect = 2e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTG 139620 ||||| || |||||||| |||||||| || || | ||| | ||| |||||||| Sbjct 3131 GTGAAGAGTGGACTCTTTCTGAATGTTGTAGTCTGAGAGTGTACGGCCGTCCTCGAGCTG 3190 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 ||| |||||| |||| ||||| ||||| || || || || || || ||||| ||| || Sbjct 3191 TTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGTGGAATTCCCTCCTTGTCTTGGATCTT 3250 Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 | ||||| | || | |||||| |||| || || || | || | ||||||||| || Sbjct 3251 TGCTTTTACGTTCTCGATCGTGTCGCTGGGTTCAACTTCCAGCGTGATCGTCTTGCCAGT 3310 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 ||| || || || || || ||||| Sbjct 3311 CAAAGTCTTGACAAAGATCTGCAT 3334 Score = 102 bits (112), Expect = 8e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTG 139620 ||||| || ||||| ||||||||||| || || || |||| |||||| ||||| Sbjct 2675 GTGAAGGGTCGACTCCTTTTGAATGTTGTAGTCAGACAGGGTGCGGCCGTCTTCTAGCTG 2734 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 ||| || ||| |||| |||||||||||||| || || || ||||| ||||| |||||| Sbjct 2735 TTTGCCCGCAAAGATAAGACGTTGCTGATCAGGTGGGATCCCTTCCTTGTCCTGGATTTT 2794 Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 | || | | ||| | ||||| | ||||| || || | || | || || ||||| Sbjct 2795 TGCCTTGACATTTTCAATGGTGTCACTAGGCTCGACTTCGAGCGTGATGGTTTTACCGGT 2854 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 | || || || || || ||||| Sbjct 2855 GAGTGTCTTGACAAAAATCTGCAT 2878 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 ||||| || || | |||| || | ||| | || || || || ||||| || || ||| Sbjct 2421 TGGCCACCGCGAAGCCGCAGGACAAGGTGGAGGGTCGATTCCTTCTGAATATTGTAGTCG 2480 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 | |||| | ||| || | ||| || || ||| |||| ||||| || || || || Sbjct 2481 GAGAGAGTGCGCCCGTCCTCCAACTGCTTGCCTGCAAAGATGAGACGCTGTTGGTCCGGT 2540 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714 || ||||| || ||||| |||||| || | | ||| | |||||| | ||||| Sbjct 2541 GGAATGCCCTCCTTGTCCTGGATTTTAGCCTTCACATTTTCGATGGTGTCGCTAGGCTCA 2600 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| | ||| | ||||||||||| | || || ||||| || ||||| Sbjct 2601 ACCTCTAGGGTTATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 2650 >seq176411 Length=6678 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 ||||| || || | |||| || | ||| | || || || || |||||||| |||||| Sbjct 4796 TGGCCACCACGGAGCCGCAGGACAAGGTGGAGGGTCGATTCCTTCTGAATGTTGTAATCG 4855 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 | |||| ||| || | ||| || || ||| |||| ||||| || || || || Sbjct 4856 GCGAGAGTGCGGCCGTCCTCCAACTGCTTGCCTGCAAAGATGAGACGCTGTTGGTCTGGT 4915 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714 || ||||| || ||||| |||||| || | | || | |||||| ||||||| Sbjct 4916 GGAATGCCCTCCTTGTCCTGGATTTTAGCCTTCACATTTTTGATGGTGTCGCTGGGCTCG 4975 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| | ||| | ||||||||||| | || || ||||| |||||||| Sbjct 4976 ACCTCCAGGGTTATGGTCTTGCCGGTGAGGGTCTTAACGAAGATTTGCAT 5025 >seq74841 Length=4471 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 ||||| || || | |||| || | ||| | || || || || |||||||| |||||| Sbjct 3218 TGGCCACCACGGAGCCGCAGGACAAGGTGGAGGGTCGATTCCTTCTGAATGTTGTAATCG 3159 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 | |||| ||| || | ||| || || ||| |||| ||||| || || || || Sbjct 3158 GAGAGAGTGCGGCCGTCCTCCAACTGCTTGCCTGCAAAGATGAGACGCTGTTGGTCTGGT 3099 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714 || ||||| || ||||| |||||| || | | || | |||||| ||||||| Sbjct 3098 GGAATGCCCTCCTTGTCCTGGATTTTAGCCTTCACATTTTTGATGGTGTCGCTGGGCTCG 3039 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| | ||| | ||||||||||| | || || ||||| |||||||| Sbjct 3038 ACCTCCAGGGTTATGGTCTTGCCGGTGAGGGTCTTAACGAAGATTTGCAT 2989 Score = 84.2 bits (92), Expect = 2e-11 Identities = 92/121 (76%), Gaps = 1/121 (1%) Strand=Plus/Minus Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTG 139620 ||||| |||||||| ||||||||||| || || | |||| |||||||||||| Sbjct 2964 GTGAAGGGTAGACTCCTTTTGAATGTTGTAGTCCGAGAGGGTGCGGCCGTCTTCGAGCTG 2905 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 || || || | || ||||| ||||| || ||||| |||||||||||||| ||| ||| Sbjct 2904 CTTGCCGGCGAAAATAAGACGCTGCTGGTCCGGAGGAATGCCTTCTTTGTC-CTGAATTT 2846 Query 139681 T 139681 | Sbjct 2845 T 2845 >seq4323 Length=113087 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 ||||| || || | || | || | ||| | || || || || |||||||| |||||| Sbjct 36893 TGGCCACCACGGAGCCGGAGGACAAGGTGGAGGGTCGATTCCTTCTGAATGTTGTAATCG 36952 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 | |||| ||| || | ||| || || ||| |||| ||||| || || || || Sbjct 36953 GAGAGAGTGCGGCCGTCCTCCAACTGCTTGCCTGCAAAGATGAGACGCTGTTGGTCTGGT 37012 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714 || ||||| || ||||| |||||| || | | || | |||||| ||||||| Sbjct 37013 GGAATGCCCTCCTTGTCCTGGATTTTAGCCTTCACATTTTTGATGGTGTCGCTGGGCTCG 37072 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| | ||| | ||||||||||| | || || ||||| |||||||| Sbjct 37073 ACCTCCAGGGTTATGGTCTTGCCGGTGAGGGTCTTAACGAAGATTTGCAT 37122 Score = 84.2 bits (92), Expect = 2e-11 Identities = 92/121 (76%), Gaps = 1/121 (1%) Strand=Plus/Plus Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTG 139620 ||||| |||||||| ||||||||||| || || | |||| |||||||||||| Sbjct 37147 GTGAAGGGTAGACTCCTTTTGAATGTTGTAGTCCGAGAGGGTGCGGCCGTCTTCGAGCTG 37206 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 || || || | || ||||| ||||| || ||||| |||||||||||||| ||| ||| Sbjct 37207 CTTGCCGGCGAAAATAAGACGCTGCTGGTCCGGAGGAATGCCTTCTTTGTC-CTGAATTT 37265 Query 139681 T 139681 | Sbjct 37266 T 37266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494854323132800