Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq9079 100 2e-16 seq48326 98.7 8e-16 >seq9079 Length=83715 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||||||||| || | || ||| | || | || || || || || | |||||||| || Sbjct 3335 GCCTCCACGAAGCCGTAGCACAAGGTGAAGGGTACTTTCTTTCTGAATGTTGTAATCAGA 3394 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 || ||||| |||| || | || |||||||| || |||| ||||| || || | || Sbjct 3395 CAGCGTACGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGAGG 3454 Query 43002 CACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGA 43060 | ||||| || || |||| | | | ||||| | ||| ||||| | | ||| | Sbjct 3455 AATTCCTTCCTTGTC-CTGAATTTTCGCCTTGACATTTTCAATGGTGTCACTCGGCTCAA 3513 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | ||| ||||||||||| || || || ||||||||||| ||||| Sbjct 3514 CTTCGAGCGTGATAGTTTTTCCCGTGAGTGTCTTCACAAAAATCTGCAT 3562 >seq48326 Length=57257 Score = 98.7 bits (108), Expect = 8e-16 Identities = 161/229 (70%), Gaps = 5/229 (2%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||||||||| || | || ||| | || | || || || || || | |||||||| || Sbjct 52869 GCCTCCACGAAGCCGTAGCACAAGGTGAAGGGTACTTTCTTTCTGAATGTTGTAATCAGA 52810 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 || ||||| ||| || | || |||||||| || |||| ||||| || || | || Sbjct 52809 CAGCGTACG---GTCCTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGAGG 52753 Query 43002 CACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGA 43060 | ||||| || || |||| | | | ||||| | ||| ||||| | || ||| | Sbjct 52752 AATTCCTTCCTTGTC-CTGAATTTTCGCCTTGACATTTTCAATAGTGTCACTAGGCTCAA 52694 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | ||| ||||||||||| || || || ||||||||||| ||||| Sbjct 52693 CTTCGAGCGTGATAGTTTTTCCCGTGAGTGTCTTCACAAAAATCTGCAT 52645 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977 ||||||||| | ||||| || |||| ||||| |||| || | |||||||| ||||| Sbjct 53517 CTCCTTTTGAATGTTGTAGTCAGACAGGGTACGGCCGTCTTCTAGCTGTTTGCCCGCAAA 53458 Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCT 43037 || | ||||| ||||| | || | ||||| || || ||| | | || || | Sbjct 53457 GATAAGACGCTGCTGATCAGGTGGAATCCCTTCCTTGTCCTGGATTTTCGCCTTCACGTT 53398 Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 ||| ||||| | | |||||| || | || || || || || || ||||| ||||| Sbjct 53397 CTCAATCGTGTCACTCGGCTCGACCTCCAGGGTGATCGTCTTGCCCGTCAGAGTCTTCAC 53338 Query 43098 AAAAATTTGCAT 43109 ||||||||||| Sbjct 53337 GAAAATTTGCAT 53326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380462860882872