Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq46432 136 6e-27 seq17548 100 4e-16 seq156397 95.1 2e-14 seq70405 93.3 6e-14 >seq46432 Length=84533 Score = 136 bits (150), Expect = 6e-27 Identities = 187/261 (72%), Gaps = 14/261 (5%) Strand=Plus/Plus Query 127312 CCGGCTATGATTAGCCTAGGTTTGAATAGATTGGCACTCT-CGGCAAGTTTGGCATAGTC 127370 || || ||||| ||| | || ||||| || ||| ||| | ||| | ||| | ||||| Sbjct 51878 CCAGCGATGATGAGCTTGGGCTTGAACAGTGCGGCCGTCTGCTGCA-GCTTGTCGTAGTC 51936 Query 127371 GACGAGTCCAGTCTGAGGATCCACCTTGTACGGCATGCTTTCGAAAAAGAGTGATGTAGC 127430 || ||| || ||||| || | ||||||||| ||||| |||||||||| || || || Sbjct 51937 GATGAGCCCCGTCTGCGGGTTCACCTTGTAGGGCATCGACTCGAAAAAGATGGACGTCGC 51996 Query 127431 GGACA------------CGTTGCGGAATCCGTGCGTCAGGTGGCCTCCGTCGGGCAGATC 127478 || | || || ||| ||||| |||||||| || ||||| ||||| || Sbjct 51997 CGAGATCTTCTTCTTGTCGGTGAAGAAGCCGTGGGTCAGGTGACCGCCGTCAGGCAGGTC 52056 Query 127479 GAGTCCCATGATTCTACCGTGCGGTTTAACGATTCCAGTGTACACGGCAAAGTTGGCCAT 127538 || |||||||| | ||| ||||| | |||| || ||||| ||||||||||||||| Sbjct 52057 CAGGCCCATGATGCGACCATGCGGCTCGACGACGCCCGTGTAGACGGCAAAGTTGGCCGG 52116 Query 127539 CGAGCCCGAGTACGGTTGTAC 127559 ||| |||||||| || || || Sbjct 52117 CGACCCCGAGTAGGGCTGCAC 52137 Score = 98.7 bits (108), Expect = 1e-15 Identities = 146/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 127101 TTTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGT 127160 ||| ||| ||||||||| || || ||||| || | || ||||||||||| || || || Sbjct 50479 TTTACGGAAAAAGATGAGCCCTGCCCGAGGTCCCCGTAGTGTCTTGTGCGTGGTGGTCGT 50538 Query 127161 CACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCCGCAAT 127220 |||||||| || || ||||| ||| ||| || | | || | || ||| | Sbjct 50539 GACAATGTCGCAGTATTCAAAAGGGTTGGGAGCTACCTGTGCGGCCACCAGGCCACTGAC 50598 Query 127221 GTGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCAATCTCTCGGAATCGTCT 127280 ||| || || |||||||| ||||| ||| | | | | ||| ||||| ||||| || | Sbjct 50599 GTGAGCCATGTCGGCCATGAGCAACGAGTTGTTTTCGTTGGCGATCTCGCGGAACCGCTT 50658 Query 127281 ATAGTCCAAGCGCCGAGGATAGCAACT 127307 ||||||| | | |||||||| || || Sbjct 50659 GTAGTCCAGGTGGCGAGGATAACAGCT 50685 >seq17548 Length=139630 Score = 100 bits (110), Expect = 4e-16 Identities = 133/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 96892 GGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTTATCG 96951 |||| || ||| | ||| | ||| |||| || |||||||| ||| | || || || | | Sbjct 2067 GGCCGGGAGCTTTTGCCATGTACCTGGAGCCCTGGCACGCAGACATCTTCGAGTTCCTTG 2008 Query 96952 AGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTATGCACTCT 97011 || || || ||| | ||| || || | ||||| |||||||||||||||| |||| Sbjct 2007 AGCTGAAGAAGAACACGGGCAAAGAGGAAACTCGAGCTCGGGACTTGTTTTATGCTCTCT 1948 Query 97012 GGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTACTGGAGCCTAATGTGCC 97071 || | ||||| |||||||||||||||| | || | ||| |||| || ||||| | Sbjct 1947 GGATCCCAGACCTGTTCATGAAGCGCGTGGAGGAAGATGGTGTCTGGTCGCTCATGTGTC 1888 Query 97072 CCGAC 97076 || || Sbjct 1887 CCCAC 1883 >seq156397 Length=2775 Score = 95.1 bits (104), Expect = 2e-14 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 127101 TTTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGT 127160 ||| ||| ||||||||| || || ||||| || | || ||||||||||| || || || Sbjct 2420 TTTACGGAAAAAGATGAGCCCTGCCCGAGGTCCCCGTAGCGTCTTGTGCGTGGTGGTCGT 2479 Query 127161 CACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCCGCAAT 127220 |||||||| || || ||||| ||| ||| || | | || | || ||| | Sbjct 2480 GACAATGTCGCAGTATTCAAAAGGGTTGGGAGCTACCTGTGCGGCCACCAGGCCACTGAC 2539 Query 127221 GTGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCAATCTCTCGGAATCGTCT 127280 ||| || || |||||||| ||||| ||| | | | ||| ||||| ||||| || | Sbjct 2540 GTGAGCCATGTCGGCCATGAGCAACGAGTTGTTCTCGTTGGCGATCTCGCGGAACCGCTT 2599 Query 127281 ATAGTCCAAGCGCCGAGGATAGCAACT 127307 ||||||| | | |||||||| || || Sbjct 2600 GTAGTCCAGGTGGCGAGGATAACAGCT 2626 >seq70405 Length=8866 Score = 93.3 bits (102), Expect = 6e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 97169 TGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACAT 97228 ||||| |||||||| ||||||| | | ||||| | || || || || || ||||| Sbjct 3067 TGCACAGCAACTGTGGTCGGCCATCCTTGAGTCTCAGATTGAAACGGGCACACCATACAT 3126 Query 97229 TCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGG 97288 || ||||||||| || |||||||| || || || | |||||||||||| | Sbjct 3127 GCTGTACAAGGATGCCTGCAATCGCAAGTCTAATCAGAAAAACCTTGGCACCATCAAGTG 3186 Query 97289 CTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAG 97334 | ||| |||||||| || | || |||||| | |||||||||||| Sbjct 3187 CAGCAACCTGTGCACCGAGGTCGTGGAGTACACATCTCCGGACGAG 3232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 739252090087840