Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_004688.1 Length=110865 Score E Sequences producing significant alignments: (Bits) Value seq122309 87.8 1e-12 seq121308 87.8 1e-12 >seq122309 Length=32212 Score = 87.8 bits (96), Expect = 1e-12 Identities = 180/267 (67%), Gaps = 3/267 (1%) Strand=Plus/Plus Query 99291 GTCACCCATTCCCATGAGTTGCTCGGCTCCGCCCTCGTCCAGGATCACCCGGCTATCGGT 99350 ||||||| | |||| | |||||| || || |||| ||||||| || |||| | Sbjct 18304 GTCACCCTTGCCCAATAATTGCTCCGCGCCCTGCTCGCCCAGGATGGTGCGCGAATCGAT 18363 Query 99351 GAGGGACGCTGTGGCGAACGACAGCCGCGAGGGCACGTTGCTCTTGATGAGGCCCGTCAC 99410 |||| | ||| || | |||| |||| || |||||| | ||| || | Sbjct 18364 CTTCGACGTGACGTGGAAGGAGATGCGCGTCGGCAGATTCGCCTTGATCACGCCGGTAAT 18423 Query 99411 CACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAGATGAATGCCGGCCGCACGCGCCTT 99470 || || ||||| || ||||||||||||| || ||| || |||||||| || |||||||| Sbjct 18424 GACGTCGACGGACGGGCGCTGCGTCGCCATGATGAGGTGGATGCCGGCGGCGCGCGCCTT 18483 Query 99471 CTGCGCGATGCGGACAATGTTGGCCTCAACCTCTTTCTTGTAGCCACCCATCATGAGATC 99530 ||||||| ||| || | || ||||| |||| | | |||||| ||||| Sbjct 18484 TTGCGCGAGGCGCTGGATAAGGAATTCGACCTC---CTTGCCGGCGGTCATCATCAGATC 18540 Query 99531 AGCGAGTTCATCCACCACTACCACGAT 99557 || || || || || | ||| ||||| Sbjct 18541 GGCCAGCTCGTCGACGATTACGACGAT 18567 >seq121308 Length=30306 Score = 87.8 bits (96), Expect = 1e-12 Identities = 180/267 (67%), Gaps = 3/267 (1%) Strand=Plus/Minus Query 99291 GTCACCCATTCCCATGAGTTGCTCGGCTCCGCCCTCGTCCAGGATCACCCGGCTATCGGT 99350 ||||||| | |||| | |||||| || || |||| ||||||| || |||| | Sbjct 1461 GTCACCCTTGCCCAATAATTGCTCCGCGCCCTGCTCGCCCAGGATGGTGCGCGAATCGAT 1402 Query 99351 GAGGGACGCTGTGGCGAACGACAGCCGCGAGGGCACGTTGCTCTTGATGAGGCCCGTCAC 99410 |||| | ||| || | |||| |||| || |||||| | ||| || | Sbjct 1401 CTTCGACGTGACGTGGAAGGAGATGCGCGTCGGCAGATTCGCCTTGATCACGCCGGTAAT 1342 Query 99411 CACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAGATGAATGCCGGCCGCACGCGCCTT 99470 || || ||||| || ||||||||||||| || ||| || |||||||| || |||||||| Sbjct 1341 GACGTCGACGGACGGGCGCTGCGTCGCCATGATGAGGTGGATGCCGGCGGCGCGCGCCTT 1282 Query 99471 CTGCGCGATGCGGACAATGTTGGCCTCAACCTCTTTCTTGTAGCCACCCATCATGAGATC 99530 ||||||| ||| || | || ||||| |||| | | |||||| ||||| Sbjct 1281 TTGCGCGAGGCGCTGGATAAGGAATTCGACCTC---CTTGCCGGCGGTCATCATCAGATC 1225 Query 99531 AGCGAGTTCATCCACCACTACCACGAT 99557 || || || || || | ||| ||||| Sbjct 1224 GGCCAGCTCGTCGACGATTACGACGAT 1198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 353800005204024