Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq9079 105 5e-18 seq48326 93.3 3e-14 seq176411 91.5 1e-13 seq74841 91.5 1e-13 seq4323 91.5 1e-13 >seq9079 Length=83715 Score = 105 bits (116), Expect = 5e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 |||||||| || || ||||| |||||||| || || | | ||||||||| ||| Sbjct 2676 TGAAGGGTCGACTCCTTTTGAATGTTGTAGTCAGACAGGGTGCGGCCGTCTTCTAGCTGT 2735 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 ||||| || | || | |||||| || || ||| || ||||| ||||| ||||| Sbjct 2736 TTGCCCGCAAAGATAAGACGTTGCTGATCAGGTGGGATCCCTTCCTTGTCCTGGATTTTT 2795 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| |||| ||||| || ||| || || || | || ||||||||||| || Sbjct 2796 GCCTTGACATTTTCAATGGTGTCACTAGGCTCGACTTCGAGCGTGATGGTTTTACCGGTG 2855 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 || || || |||||||| ||||| Sbjct 2856 AGTGTCTTGACAAAAATCTGCAT 2878 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 |||||||| ||||| || ||||||||||| || | | |||| || | || Sbjct 3360 TGAAGGGTACTTTCTTTCTGAATGTTGTAATCAGACAGCGTACGGCCGTCCTCAAGCTGC 3419 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 ||||| ||| | |||| ||| || ||||| ||||||||||| ||||| |||||| Sbjct 3420 TTGCCGGCGAAGATCAGACGCTGCTGGTCAGGAGGAATTCCTTCCTTGTCCTGAATTTTC 3479 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| |||| ||||| || || || || || | || || ||||| || || Sbjct 3480 GCCTTGACATTTTCAATGGTGTCACTCGGCTCAACTTCGAGCGTGATAGTTTTTCCCGTG 3539 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 || || || |||||||| ||||| Sbjct 3540 AGTGTCTTCACAAAAATCTGCAT 3562 Score = 89.7 bits (98), Expect = 4e-13 Identities = 146/206 (71%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGTCTTCTAATT 15218 ||||| ||||| ||||| || |||||||| || | ||| | || |||| || | | Sbjct 3132 TGAAGAGTGGACTCTTTCTGAATGTTGTAGTC--TGAGAGTGTACGGCCGTCCTCGAGCT 3189 Query 15219 GTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-T 15277 |||||||||| | || | ||| || ||||| ||||||||| || ||||| || | Sbjct 3190 GTTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGTGGAATTCCCTCCTTGTCTTGGATCT 3249 Query 15278 TTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCT 15337 ||||| ||||| | || || || ||||| ||| || || | || || || || || Sbjct 3250 TTGCT-TTTACGTTCTCGATCGTGTCGCTGGGTTCAACTTCCAGCGTGATCGTCTTGCCA 3308 Query 15338 GTCAGAGTTTTTACAAAAATTTGCAT 15363 |||| ||| || ||||| || ||||| Sbjct 3309 GTCAAAGTCTTGACAAAGATCTGCAT 3334 >seq48326 Length=57257 Score = 93.3 bits (102), Expect = 3e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 |||||||||||| || || || |||||||| || ||| | | ||||||| | || Sbjct 53301 ATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGATAGTGTGCGGCCGTCTTCGAGCTG 53242 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TT 15278 || || ||| | || | ||| || || || ||||| ||||| ||||| || || Sbjct 53241 CTTTCCGGCGAAGATGAGACGCTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGGATCTT 53182 Query 15279 TGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTG 15338 ||| ||| ||| |||| ||||| || || || || || | || ||||||||||| | Sbjct 53181 TGC-CTTGACATTTTCAATGGTGTCACTGGGCTCGACTTCGAGCGTGATGGTTTTACCGG 53123 Query 15339 TCAGAGTTTTTACAAAAATTTGCAT 15363 | || || || |||||||| ||||| Sbjct 53122 TGAGTGTCTTGACAAAAATCTGCAT 53098 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 |||||||| || || ||||| |||||||| || || | | ||||||||| ||| Sbjct 53528 TGAAGGGTCGACTCCTTTTGAATGTTGTAGTCAGACAGGGTACGGCCGTCTTCTAGCTGT 53469 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 ||||| || | || | ||| || || || |||||| ||||| ||||| ||||| Sbjct 53468 TTGCCCGCAAAGATAAGACGCTGCTGATCAGGTGGAATCCCTTCCTTGTCCTGGATTTTC 53409 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| || | || || || || || || || || | ||| || || || || ||| Sbjct 53408 GCCTTCACGTTCTCAATCGTGTCACTCGGCTCGACCTCCAGGGTGATCGTCTTGCCCGTC 53349 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 ||||| || || ||||||||||| Sbjct 53348 AGAGTCTTCACGAAAATTTGCAT 53326 Score = 86.0 bits (94), Expect = 5e-12 Identities = 141/203 (69%), Gaps = 3/203 (1%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 |||||||| ||||| || ||||||||||| || | | ||| || | || Sbjct 52844 TGAAGGGTACTTTCTTTCTGAATGTTGTAATCAGACAGCGTACG---GTCCTCAAGCTGC 52788 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 ||||| ||| | |||| ||| || ||||| ||||||||||| ||||| |||||| Sbjct 52787 TTGCCGGCGAAGATCAGACGCTGCTGGTCAGGAGGAATTCCTTCCTTGTCCTGAATTTTC 52728 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| |||| || || || ||| || || || | || || ||||| || || Sbjct 52727 GCCTTGACATTTTCAATAGTGTCACTAGGCTCAACTTCGAGCGTGATAGTTTTTCCCGTG 52668 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 || || || |||||||| ||||| Sbjct 52667 AGTGTCTTCACAAAAATCTGCAT 52645 >seq176411 Length=6678 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || ||||| || || || || |||||||||||| ||| | | |||| || || || Sbjct 4823 TGGAGGGTCGATTCCTTCTGAATGTTGTAATCGGCGAGAGTGCGGCCGTCCTCCAACTGC 4882 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 ||||| || | || | ||| |||||||| |||||| || || ||||| ||||| Sbjct 4883 TTGCCTGCAAAGATGAGACGCTGTTGGTCTGGTGGAATGCCCTCCTTGTCCTGGATTTTA 4942 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| ||| ||||| ||||| || || || | ||| ||||| || || || Sbjct 4943 GCCTTCACATTTTTGATGGTGTCGCTGGGCTCGACCTCCAGGGTTATGGTCTTGCCGGTG 5002 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 || || || || || |||||||| Sbjct 5003 AGGGTCTTAACGAAGATTTGCAT 5025 >seq74841 Length=4471 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || ||||| || || || || |||||||||||| ||| | | |||| || || || Sbjct 3191 TGGAGGGTCGATTCCTTCTGAATGTTGTAATCGGAGAGAGTGCGGCCGTCCTCCAACTGC 3132 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 ||||| || | || | ||| |||||||| |||||| || || ||||| ||||| Sbjct 3131 TTGCCTGCAAAGATGAGACGCTGTTGGTCTGGTGGAATGCCCTCCTTGTCCTGGATTTTA 3072 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| ||| ||||| ||||| || || || | ||| ||||| || || || Sbjct 3071 GCCTTCACATTTTTGATGGTGTCGCTGGGCTCGACCTCCAGGGTTATGGTCTTGCCGGTG 3012 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 || || || || || |||||||| Sbjct 3011 AGGGTCTTAACGAAGATTTGCAT 2989 >seq4323 Length=113087 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || ||||| || || || || |||||||||||| ||| | | |||| || || || Sbjct 36920 TGGAGGGTCGATTCCTTCTGAATGTTGTAATCGGAGAGAGTGCGGCCGTCCTCCAACTGC 36979 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 ||||| || | || | ||| |||||||| |||||| || || ||||| ||||| Sbjct 36980 TTGCCTGCAAAGATGAGACGCTGTTGGTCTGGTGGAATGCCCTCCTTGTCCTGGATTTTA 37039 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| ||| ||||| ||||| || || || | ||| ||||| || || || Sbjct 37040 GCCTTCACATTTTTGATGGTGTCGCTGGGCTCGACCTCCAGGGTTATGGTCTTGCCGGTG 37099 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 || || || || || |||||||| Sbjct 37100 AGGGTCTTAACGAAGATTTGCAT 37122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361318087714044