Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq9079 98.7 8e-16 seq48326 84.2 2e-11 >seq9079 Length=83715 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 ||||||| |||| || | || | ||| | || |||||||||||||| ||||| || | Sbjct 2650 TTCCTCCGCGCAGCCGGAGGACAAGGTGAAGGGTCGACTCCTTTTGAATGTTGTAGTCAG 2709 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 || || | |||| || |||||||| |||||| | ||||| | |||||||| | Sbjct 2710 ACAGGGTGCGGCCGTCTTCTAGCTGTTTGCCCGCAAAGATAAGACGTTGCTGATCAGGTG 2769 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | || || ||||| ||||| || || | | | || || | |||||| Sbjct 2770 GGATCCCTTCCTTGTCCTGGATTTTTGCCTTGACATTTTCAATGGTGTCACTAGGCTCGA 2829 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||||| || ||||||||||| || | || ||||||||||| ||||| Sbjct 2830 CTTCGAGCGTGATGGTTTTACCGGTGAGTGTCTTGACAAAAATCTGCAT 2878 >seq48326 Length=57257 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 ||||||| |||| || | || | ||| | || |||||||||||||| ||||| || | Sbjct 53554 TTCCTCCGCGCAGCCGGAGGACAAGGTGAAGGGTCGACTCCTTTTGAATGTTGTAGTCAG 53495 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 || || | |||| || |||||||| |||||| | ||||| | ||||||||| | Sbjct 53494 ACAGGGTACGGCCGTCTTCTAGCTGTTTGCCCGCAAAGATAAGACGCTGCTGATCAGGTG 53435 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | || || ||||| |||||| || || | | | || || | ||||| Sbjct 53434 GAATCCCTTCCTTGTCCTGGATTTTCGCCTTCACGTTCTCAATCGTGTCACTCGGCTCGA 53375 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | ||| || || || || || | ||| || || ||||||||||| Sbjct 53374 CCTCCAGGGTGATCGTCTTGCCCGTCAGAGTCTTCACGAAAATTTGCAT 53326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 413587117411096