Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_005261.2 Length=137821 Score E Sequences producing significant alignments: (Bits) Value seq121300 109 5e-19 >seq121300 Length=48805 Score = 109 bits (120), Expect = 5e-19 Identities = 229/330 (69%), Gaps = 15/330 (5%) Strand=Plus/Plus Query 99435 GCCCCAGAGCATGAACACCATCGGGCC--GCCCTGCG-CGCTCAGGCGGGCCAGCACCGC 99491 |||||| ||||||||||| ||||| | | | ||| || |||||||| | | ||| Sbjct 8696 GCCCCATAGCATGAACACGATCGGCTCCGGTCGCGCGGCGATCAGGCGG---ATGATCGC 8752 Query 99492 GTGCACCAGCCGCCCCCAGCCCAGGCTGGCG-TGCGAGCCCGGCGCCCCGCTCCGCACGG 99550 || | | | |||| |||| | | ||| |||||| | | | |||||| ||| | Sbjct 8753 GTCGGTGAACTTCTCCCA-CCCACGGTCGCGGTGCGAGGCAGCCTGGCCGCTCACCACTG 8811 Query 99551 TGAGCGAGGTGTTGAGCAGCAGCACGCCGCGGCG-CGCCCAGGCCTCCAGGCAGCCGTGC 99609 | ||| | |||||||||||||||| || | ||| ||||||| || ||| |||||||| Sbjct 8812 TCAGCACGCTGTTGAGCAGCAGCACACC-CTGCGTCGCCCAGCTTTCAAGGAAGCCGTGC 8870 Query 99610 TGCGGCCGCGGGGTCCCGGGGAAGTTCTTCTGCACGGCCGCGTAGATGTTCTGGAGGCTG 99669 ||| |||| | | || | ||| | | | || ||||||||| |||||| Sbjct 8871 GCCGGGCGCGCGATGCC---GCAGTCGGTTTCGAGTTCCTTGTAGATGTTGACGAGGCTC 8927 Query 99670 GGCGG-GATCGGAACGCCGCGGTTCACGCTGAAGGCCAGGCCGTGGGCCTGCCCGTGGCT 99728 ||||| | ||| |||||| || ||| |||| ||||||||| |||||| | | | Sbjct 8928 GGCGGCGGGCGG-ACGCCGGGGCGGACGGAGAAGCACAGGCCGTGCGCCTGCTCCGGCCC 8986 Query 99729 GTGGTAGGGGTCCTGGCCCAGGATGACGAC 99758 ||| || ||||| || |||||||| ||||| Sbjct 8987 GTGATACGGGTCTTGCCCCAGGATCACGAC 9016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 439824045255840