Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq48326 159 8e-34 seq9079 154 3e-32 >seq48326 Length=57257 Score = 159 bits (176), Expect = 8e-34 Identities = 166/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 |||| || || ||||| | || || || |||||||| || ||||||||||| || | Sbjct 53315 AGCCGCAGGACGAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGATAGTGTGCGG 53256 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 |||||||| || || ||||| || || || || | ||| ||||| ||||| || ||||| Sbjct 53255 CCGTCTTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCCGGAGGAATGCCTTCC 53196 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 || ||||| |||||||| || |||||||| | ||| || || || || || || || || Sbjct 53195 TTGTCCTGGATCTTTGCCTTGACATTTTCAATGGTGTCACTGGGCTCGACTTCGAGCGTG 53136 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || ||||| || ||||| || ||||| |||||||| Sbjct 53135 ATGGTTTTACCGGTGAGTGTCTTGACAAAAATCTGCAT 53098 Score = 138 bits (152), Expect = 3e-27 Identities = 162/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 |||| || || || || | || ||||| ||||||||||| ||||| || ||||| | Sbjct 53771 AGCCGCAGGACAAGGTGGAGGGTCGATTCCTTCTGAATATTGTAGTCGGAGAGAGTACGC 53712 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || ||||| | || || || ||||| || || | |||||| || || || || || || Sbjct 53711 CCATCTTCCAACTGCTTGCCTGCAAAGATGAGACGCTGTTGGTCCGGTGGAATGCCCTCC 53652 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 || ||||| || || || || |||||||| | ||| |||||||| || ||||| || || Sbjct 53651 TTGTCCTGGATTTTAGCCTTCACATTTTCGATGGTGTCGCTAGGCTCAACCTCCAGGGTT 53592 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || ||||| || || || || || || || ||||||||| Sbjct 53591 ATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATT 53553 Score = 134 bits (148), Expect = 3e-26 Identities = 161/218 (74%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 |||| || || || || | ||| |||||||||||| || || ||||| || | || Sbjct 52859 AGCCGTAGCACAAGGTGAAGGGTACTTTCTTTCTGAATGTTGTAATCAGACAGCG---TA 52803 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 | ||| || || || || || || || || || | ||| || |||||||| |||||||| Sbjct 52802 CGGTCCTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGAGGAATTCCTTCC 52743 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 || |||||||| || || || |||||||| | || || ||||| || || || || || Sbjct 52742 TTGTCCTGAATTTTCGCCTTGACATTTTCAATAGTGTCACTAGGCTCAACTTCGAGCGTG 52683 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| || ||||| |||||||| Sbjct 52682 ATAGTTTTTCCCGTGAGTGTCTTCACAAAAATCTGCAT 52645 Score = 127 bits (140), Expect = 5e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | |||| || || || || | || || || || ||||| || |||||| Sbjct 53555 ATTCCTCCGCGCAGCCGGAGGACAAGGTGAAGGGTCGACTCCTTTTGAATGTTGTAGTCA 53496 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | ||||||||||| ||||| || ||||| || || | ||| |||||||| Sbjct 53495 GACAGGGTACGGCCGTCTTCTAGCTGTTTGCCCGCAAAGATAAGACGCTGCTGATCAGGT 53436 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||| || || || || || || || | || || || || || Sbjct 53435 GGAATCCCTTCCTTGTCCTGGATTTTCGCCTTCACGTTCTCAATCGTGTCACTCGGCTCG 53376 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| || || || || || || || || ||||| Sbjct 53375 ACCTCCAGGGTGATCGTCTTGCCCGTCAGAGTCTTCACGAAAATTTGCAT 53326 Score = 125 bits (138), Expect = 2e-23 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || |||||||| || || ||||| || || || | ||||| || || || || || Sbjct 53066 GTGGACTCTTTCTGGATGTTGTAGTCCGAAAGTGTGCGGCCGTCCTCGAGCTGCTTGCCG 53007 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | ||| || || || || ||||| || || || || |||||||||||| Sbjct 53006 GCAAAGATGAGACGCTGCTGGTCTGGTGGAATTCCCTCCTTGTCTTGGATCTTTGCTTTT 52947 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | || ||||| ||||| || || || || || ||||| ||||| | || Sbjct 52946 ACGTTCTCGATCGTGTCGCTGGGTTCAACTTCCAGCGTGATTGTCTTGCCAGTCAAAGTC 52887 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 52886 TTGACAAAGATCTGCAT 52870 >seq9079 Length=83715 Score = 154 bits (170), Expect = 3e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | |||| || || || || | || || || || ||||| || |||||| Sbjct 2649 ATTCCTCCGCGCAGCCGGAGGACAAGGTGAAGGGTCGACTCCTTTTGAATGTTGTAGTCA 2708 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | ||||||||||| ||||| || ||||| || || | || |||||||| Sbjct 2709 GACAGGGTGCGGCCGTCTTCTAGCTGTTTGCCCGCAAAGATAAGACGTTGCTGATCAGGT 2768 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||| || ||||| || |||||||| | ||| || ||||| || Sbjct 2769 GGGATCCCTTCCTTGTCCTGGATTTTTGCCTTGACATTTTCAATGGTGTCACTAGGCTCG 2828 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || || ||||| || ||||| || ||||| |||||||| Sbjct 2829 ACTTCGAGCGTGATGGTTTTACCGGTGAGTGTCTTGACAAAAATCTGCAT 2878 Score = 143 bits (158), Expect = 6e-29 Identities = 163/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 |||| || || || || | || ||||| ||||||||||| ||||| || ||||| | Sbjct 2433 AGCCGCAGGACAAGGTGGAGGGTCGATTCCTTCTGAATATTGTAGTCGGAGAGAGTGCGC 2492 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 ||||| || | || || || ||||| || || | |||||| || || || || || || Sbjct 2493 CCGTCCTCCAACTGCTTGCCTGCAAAGATGAGACGCTGTTGGTCCGGTGGAATGCCCTCC 2552 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 || ||||| || || || || |||||||| | ||| |||||||| || |||||||| || Sbjct 2553 TTGTCCTGGATTTTAGCCTTCACATTTTCGATGGTGTCGCTAGGCTCAACCTCTAGGGTT 2612 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || ||||| || || || || || || || ||||||||| Sbjct 2613 ATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATT 2651 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 |||| || || || || | || || ||||||||||| || ||||| || || || | Sbjct 3117 AGCCGTAGCACAAGGTGAAGAGTGGACTCTTTCTGAATGTTGTAGTCTGAGAGTGTACGG 3176 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 ||||| || || ||||| |||||||| || || | ||| || || || || ||||| || Sbjct 3177 CCGTCCTCGAGCTGTTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGTGGAATTCCCTCC 3236 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 || || || |||||||||||||| || || | || ||||| ||||| || || || || Sbjct 3237 TTGTCTTGGATCTTTGCTTTTACGTTCTCGATCGTGTCGCTGGGTTCAACTTCCAGCGTG 3296 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| ||||| | || || ||||| |||||||| Sbjct 3297 ATCGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 3334 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 |||| || || || || | ||| |||||||||||| || || ||||| || || | Sbjct 3345 AGCCGTAGCACAAGGTGAAGGGTACTTTCTTTCTGAATGTTGTAATCAGACAGCGTACGG 3404 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 ||||| || || || || || || || || || | ||| || |||||||| |||||||| Sbjct 3405 CCGTCCTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGAGGAATTCCTTCC 3464 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 || |||||||| || || || |||||||| | ||| || || || || || || || || Sbjct 3465 TTGTCCTGAATTTTCGCCTTGACATTTTCAATGGTGTCACTCGGCTCAACTTCGAGCGTG 3524 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| || ||||| |||||||| Sbjct 3525 ATAGTTTTTCCCGTGAGTGTCTTCACAAAAATCTGCAT 3562 Score = 118 bits (130), Expect = 2e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 |||| || || ||||||||||| || ||||| || || || | ||||| || || || Sbjct 2904 TGTAGGGTGGACTCTTTCTGAATGTTGTAGTCTGAGAGTGTGCGGCCGTCCTCGAGCTGC 2963 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || || ||||| || || | ||| || ||||| || || || || || || || |||||| Sbjct 2964 TTGCCGGCAAAGATGAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTCTTGGATCTTT 3023 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 ||||| || || || | || || || ||||| || ||||| || || || || ||||| Sbjct 3024 GCTTTGACGTTCTCGATCGTGTCACTGGGTTCAACTTCTAGCGTGATCGTTTTGCCAGTC 3083 Query 104537 AGTGTTTTTACAAATATCTGCAT 104559 | || || || || |||||||| Sbjct 3084 AAAGTCTTGACGAAGATCTGCAT 3106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1148520463867472