Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq9079 122 7e-23 seq48326 116 3e-21 >seq9079 Length=83715 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| || | || || ||| | ||||| || || || || |||||||||||||||| | Sbjct 3336 CCTCCACGAAGCCGTAGCACAAGGTGAAGGGTACTTTCTTTCTGAATGTTGTAATCAGAC 3395 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 | || ||||||| |||||||| ||| || | || | ||||||||| || || Sbjct 3396 AGCGTACGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGAGGA 3455 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | | |||||||||| ||||||| ||||| | | ||||| || | | ||| Sbjct 3456 ATTCCTTCCTTGTCCTGAATTTTCGCCTTGACATTTTCAATGGTGTCACTCGGCTCAACT 3515 Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 |||| || || ||||| || ||||| || ||||||||||||||||| Sbjct 3516 TCGAGCGTGATAGTTTTTCCCGTGAGTGTCTTCACAAAAATCTGCAT 3562 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 |||||||||| || | || | ||||| || |||||||||||||||||| |||| | Sbjct 2652 CCTCCGCGCAGCCGGAGGACAAGGTGAAGGGTCGACTCCTTTTGAATGTTGTAGTCAGAC 2711 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 | || |||| || ||||| || || | | || | ||| |||||||| || Sbjct 2712 AGGGTGCGGCCGTCTTCTAGCTGTTTGCCCGCAAAGATAAGACGTTGCTGATCAGGTGGG 2771 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | | |||||||||| ||||| ||||| | | ||||| || ||| ||| Sbjct 2772 ATCCCTTCCTTGTCCTGGATTTTTGCCTTGACATTTTCAATGGTGTCACTAGGCTCGACT 2831 Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 |||| || ||||||||||||||||| || || |||||||||||||| Sbjct 2832 TCGAGCGTGATGGTTTTACCGGTGAGTGTCTTGACAAAAATCTGCAT 2878 >seq48326 Length=57257 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || ||||| | || | || | |||||| ||| |||||| ||||||||||| |||| Sbjct 53324 CCACCGCGGAGCCGCAGGACGAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGAT 53265 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 | | || |||| || |||||||| ||| || | || | ||||||||||||| || Sbjct 53264 AGTGTGCGGCCGTCTTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCCGGAGGA 53205 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | | |||||||||| || || ||||| | | ||||| || | | ||| Sbjct 53204 ATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATTTTCAATGGTGTCACTGGGCTCGACT 53145 Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 |||| || ||||||||||||||||| || || |||||||||||||| Sbjct 53144 TCGAGCGTGATGGTTTTACCGGTGAGTGTCTTGACAAAAATCTGCAT 53098 Score = 114 bits (126), Expect = 1e-20 Identities = 162/227 (71%), Gaps = 3/227 (1%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| || | || || ||| | ||||| || || || || |||||||||||||||| | Sbjct 52868 CCTCCACGAAGCCGTAGCACAAGGTGAAGGGTACTTTCTTTCTGAATGTTGTAATCAGAC 52809 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 | || |||||| |||||||| ||| || | || | ||||||||| || || Sbjct 52808 AGCGTACG---GTCCTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGAGGA 52752 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | | |||||||||| ||||||| ||||| | | || || || ||| ||| Sbjct 52751 ATTCCTTCCTTGTCCTGAATTTTCGCCTTGACATTTTCAATAGTGTCACTAGGCTCAACT 52692 Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 |||| || || ||||| || ||||| || ||||||||||||||||| Sbjct 52691 TCGAGCGTGATAGTTTTTCCCGTGAGTGTCTTCACAAAAATCTGCAT 52645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420249638939084