Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_005856.1 Length=94800 Score E Sequences producing significant alignments: (Bits) Value seq106062 96.9 2e-15 >seq106062 Length=20311 Score = 96.9 bits (106), Expect = 2e-15 Identities = 241/361 (67%), Gaps = 4/361 (1%) Strand=Plus/Minus Query 72267 GACTACCTGCAACTTATGCGCGTCCCCGAGCTGCAAGATAACCGAACGCTGGAAATTGCC 72326 || || || ||| | |||| |||||| | | || ||||| | | ||||| | Sbjct 6291 GATTATCTTCAATTAATGCATGTCCCCAACAATCGTGAAAACCGTAGTATAGAAATATCT 6232 Query 72327 GAGATTTCTCGCTCACTGAAGGCGTTGGCGAAGGAATTACAAGTACCGGTGGTGGCATTG 72386 || ||||| || || | || | | | || || |||||| | | || || | || || Sbjct 6231 GAAATTTCCCGTTCTTTAAAAGAGCTAGCAAAAGAATTAAATATTCCTGTTATCGCTTTA 6172 Query 72387 TCACAACTTAATCGATCGCTT-GAACAGCGTGCGGACAAACGACCGGTAAATTCAGATTT 72445 || || || ||||| | | || ||| ||| | || ||||| || || | || ||||| Sbjct 6171 TCTCAGCTGAATCG-TAGTTTAGAAGCTCGTACAGATAAACGTCCAGTGATGTCGGATTT 6113 Query 72446 ACGTGAATCAGGAGCAATTGAGCAGGACGCAGACCTGATTATGTTTCTGTATCGCGACGA 72505 ||||||||||| |||||||| || || || || || ||| ||| | ||||| || || Sbjct 6112 GCGTGAATCAGGTGCAATTGAACAAGATGCTGATCTCATTGCTTTTATTTATCGTGATGA 6053 Query 72506 AGTTTATCACCCGGA-TAGCGAAATGAAGGGCATTGCCGAGGTAATTATCGGAAAGCAAC 72564 || ||||| || | | || || || | || ||| | ||||| | |||||| | Sbjct 6052 GGTGTATCATGAAGATTCTCCTGAT-AAAGGTAAAGCAGAGATTATTATTGCAAAGCATC 5994 Query 72565 GAAATGGCCCAATTGGCACGGTGAGATTGGCTTTTAACGGCCAATACTCACGGTTTGATA 72624 | ||||| || ||||||| ||| | | | | ||| || ||||| | || ||||||| Sbjct 5993 GGAATGGTCCTATTGGCAAGGTAATACTCACGTTTCGGGGGCAATATACTCGCTTTGATA 5934 Query 72625 A 72625 | Sbjct 5933 A 5933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 302514232157964