Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_006552.1 Length=65195 Score E Sequences producing significant alignments: (Bits) Value seq121807 87.8 7e-13 seq121347 87.8 7e-13 >seq121807 Length=11772 Score = 87.8 bits (96), Expect = 7e-13 Identities = 203/300 (68%), Gaps = 17/300 (6%) Strand=Plus/Plus Query 11216 TAGTGGTCCTGGCCGTCCTGGCCCTGCCACTTGCGGGTGCGTAGGCTGCCTTCGATGTAG 11275 ||| |||||||||| | ||| |||||||||| || || | || ||| ||||| ||| Sbjct 2365 TAGCGGTCCTGGCCCTGCTGATCCTGCCACTTACGCGTCTGGAGCTGGCCCTCGATATAG 2424 Query 11276 ACCTGGGAGCCCTTTCGCAGGTATTGCGCTGCGATTTCGGCCAGCCGGCCA---AAGAGC 11332 |||| || ||||| ||||| | || | |||| | || |||| | |||| | Sbjct 2425 ACCTTCGATCCCTTGCGCAGAAAACGCTCCGCGACGTTTGCGAGCCCCTCGTTGAAGATC 2484 Query 11333 ACGACCCGGTGCCACTCGGTGCGCTCCTGCTGCTGGCCGGTCTGCTTG---TCTTTCCAG 11389 ||||| ||||| ||||||||||||| ||| |||| ||| ||| || ||||| Sbjct 2485 GCGACCGAATGCCATTCGGTGCGCTCCTTGCGCTCGCCG--CTG-TTGCGATCCTTCCAC 2541 Query 11390 CTTTCGCTAGTGGCCAGACTGAGGGAGGTGACCGCCTTTCCGCCCGGGGTAGATCTTGCG 11449 |||| ||||| | | ||| | ||| |||| ||||| | || | |||| Sbjct 2542 GTTTCCGACGTGGCGATGCGCAGGT---TCACCACCTTGCCGCCATTC-TGGAACGTGCG 2597 Query 11450 ----TCTGGATCCTGGCCCAGATGGCCGACCAGGATTACCTTGTTCACTCCGCGTGCCAT 11505 || || || | || |||| |||||| || ||||||||||| || | || |||||| Sbjct 2598 CGATTCGGGGTCACGCCCGAGATTGCCGACGAGAATTACCTTGTTAACGCTGCCTGCCAT 2657 >seq121347 Length=11177 Score = 87.8 bits (96), Expect = 7e-13 Identities = 203/300 (68%), Gaps = 17/300 (6%) Strand=Plus/Minus Query 11216 TAGTGGTCCTGGCCGTCCTGGCCCTGCCACTTGCGGGTGCGTAGGCTGCCTTCGATGTAG 11275 ||| |||||||||| | ||| |||||||||| || || | || ||| ||||| ||| Sbjct 9409 TAGCGGTCCTGGCCCTGCTGATCCTGCCACTTACGCGTCTGGAGCTGGCCCTCGATATAG 9350 Query 11276 ACCTGGGAGCCCTTTCGCAGGTATTGCGCTGCGATTTCGGCCAGCCGGCCA---AAGAGC 11332 |||| || ||||| ||||| | || | |||| | || |||| | |||| | Sbjct 9349 ACCTTCGATCCCTTGCGCAGAAAACGCTCCGCGACGTTTGCGAGCCCCTCGTTGAAGATC 9290 Query 11333 ACGACCCGGTGCCACTCGGTGCGCTCCTGCTGCTGGCCGGTCTGCTTG---TCTTTCCAG 11389 ||||| ||||| ||||||||||||| ||| |||| ||| ||| || ||||| Sbjct 9289 GCGACCGAATGCCATTCGGTGCGCTCCTTGCGCTCGCCG--CTG-TTGCGATCCTTCCAC 9233 Query 11390 CTTTCGCTAGTGGCCAGACTGAGGGAGGTGACCGCCTTTCCGCCCGGGGTAGATCTTGCG 11449 |||| ||||| | | ||| | ||| |||| ||||| | || | |||| Sbjct 9232 GTTTCCGACGTGGCGATGCGCAGGT---TCACCACCTTGCCGCCATTC-TGGAACGTGCG 9177 Query 11450 ----TCTGGATCCTGGCCCAGATGGCCGACCAGGATTACCTTGTTCACTCCGCGTGCCAT 11505 || || || | || |||| |||||| || ||||||||||| || | || |||||| Sbjct 9176 CGATTCGGGGTCACGCCCGAGATTGCCGACGAGAATTACCTTGTTAACGCTGCCTGCCAT 9117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 208003475168944