Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq171013 107 5e-18 seq17548 107 5e-18 seq188574 104 6e-17 >seq171013 Length=8497 Score = 107 bits (118), Expect = 5e-18 Identities = 128/173 (74%), Gaps = 8/173 (5%) Strand=Plus/Plus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 |||||| | || |||| ||||||| | || || ||||||||||| || ||||| || ||| Sbjct 3337 GCACAGCAACTGTGGTCTGCCATCCTTGAGTCTCAGATTGAGACGGGCACACCATACATG 3396 Query 364171 TTGTACAAAGAT-------TCGTGCAAC-CGCAAGTCCAACCAGCAGCACCTTGGTACAA 364222 ||||||||||| || ||||| |||||||| || ||| | ||||||| || | Sbjct 3397 CTGTACAAAGATGGGCCGCTCTGGCAACTCGCAAGTCTAATCAGAAAAACCTTGGCACCA 3456 Query 364223 TTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAG 364275 | || |||||||| || |||||| | | || ||||| |||| |||||| Sbjct 3457 TCAAGTGCAGCAACCTGTGCACCGAGGTCGTGGAGTACACATCTCCGGACGAG 3509 >seq17548 Length=139630 Score = 107 bits (118), Expect = 5e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 363838 GGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTC 363897 || || ||||| ||||| || ||||| || || || || || ||||| |||||||| Sbjct 2062 GGAGCTTTTGCCATGTACCTGGAGCCCTGGCACGCAGACATCTTCGAGTTCCTTGAGCTG 2003 Query 363898 CGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTT 363957 ||| |||||||| ||||||||| || || || || |||| ||||| || ||| | Sbjct 2002 AAGAAGAACACGGGCAAAGAGGAAACTCGAGCTCGGGACTTGTTTTATGCTCTCTGGATC 1943 Query 363958 TCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACAC 364017 | |||| || |||||||||||||||| || | ||||| ||| | || || ||| Sbjct 1942 CCAGACCTGTTCATGAAGCGCGTGGAGGAAGATGGTGTCTGGTCGCTCATGTGTCCCCAC 1883 Query 364018 GAATGTCCAGGTCT 364031 ||||| || || || Sbjct 1882 GAATGCCCTGGGCT 1869 >seq188574 Length=9004 Score = 104 bits (114), Expect = 6e-17 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 364129 GCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGC 364188 |||||| | || || ||||||||||| || ||||| || ||| ||||||| ||| | ||| Sbjct 8703 GCCATCCTTGAGTCTCAGATTGAGACGGGCACACCATACATGCTGTACAAGGATGCCTGC 8644 Query 364189 AACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAG 364248 || |||||||| || ||| | ||||||| || || || |||||||| || |||||| Sbjct 8643 AATCGCAAGTCTAATCAGAAAAACCTTGGCACCATCAAGTGCAGCAACCTGTGCACCGAG 8584 Query 364249 ATTATTGAATACACCGCTCCCGACGAG 364275 | || ||||| |||| |||||| Sbjct 8583 GTGGCGGAGTACACATCTCCGGACGAG 8557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1300095849755688