Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq48326 102 7e-17 seq74841 86.0 5e-12 seq4323 86.0 5e-12 >seq48326 Length=57257 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || ||| | || || ||| | || || ||||||||||| ||| Sbjct 53098 ATGCAGATTTTTGTCAAGACACTCACCGGTAAAACCATCACGCTCGAAGTCGAGCCCAGT 53157 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | ||||| |||||| ||||| |||||||| ||||| ||||| Sbjct 53158 GACACCATTGAAAATGTCAAGGCAAAGATCCAGGACAAGGAAGGCATTCCTCCGGATCAG 53217 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | || ||| ||||| |||||||| | | | | | || || ||| Sbjct 53218 CAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAAGACGGCCGCACACTATCTGACTACAAC 53277 Query 24171 ATTCAAAAAGAATCTACAATTCAT 24194 ||||| || || || || ||||| Sbjct 53278 ATTCAGAAGGAGTCCACCCTTCAT 53301 >seq74841 Length=4471 Score = 86.0 bits (94), Expect = 5e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143 |||||||||||||| ||||| || || ||| | || |||| || ||||||||| |||||| Sbjct 2854 GACAAAGAAGGCATTCCTCCGGACCAGCAGCGTCTTATTTTCGCCGGCAAGCAGCTCGAA 2913 Query 24144 GATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCA 24193 || | | | | | || || || ||||||||||| || ||||| |||| Sbjct 2914 GACGGCCGCACCCTCTCGGACTACAACATTCAAAAGGAGTCTACCCTTCA 2963 >seq4323 Length=113087 Score = 86.0 bits (94), Expect = 5e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143 |||||||||||||| ||||| || || ||| | || |||| || ||||||||| |||||| Sbjct 37257 GACAAAGAAGGCATTCCTCCGGACCAGCAGCGTCTTATTTTCGCCGGCAAGCAGCTCGAA 37198 Query 24144 GATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCA 24193 || | | | | | || || || ||||||||||| || ||||| |||| Sbjct 37197 GACGGCCGCACCCTCTCGGACTACAACATTCAAAAGGAGTCTACCCTTCA 37148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428913790078020