Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_007497.1 Length=44856 Score E Sequences producing significant alignments: (Bits) Value seq122308 268 3e-67 seq121306 268 3e-67 >seq122308 Length=32707 Score = 268 bits (296), Expect = 3e-67 Identities = 625/933 (67%), Gaps = 16/933 (2%) Strand=Plus/Plus Query 43339 CCAGAAGTCTGCGCCGGCCCACCGGTCGGACCGGAGGTTCATGCCGATCTCGACGTTGAG 43398 |||||| || || |||| ||| |||||| | ||| | | ||||||||||||||||| Sbjct 27637 CCAGAAATCGGCACCGGTCCAGCGGTCGCCCGCGAGCCGCGTTCCGATCTCGACGTTGAG 27696 Query 43399 GTGCTTCGCGATGAACTGCTGGAACGATCC-GTCAGTCTTGGTGCGGATCTTGTTGAGCT 43457 || ||||||| ||| ||| || | || | | | | | | || | ||||| Sbjct 27697 ATGTTTCGCGAGAAACATCTGCAAGGCCCCCGCCTCGCCGCCTTCCGC-CTCGGCGAGCT 27755 Query 43458 GGTCCTCCAGCCATTCGGCACTGACCGACCGCCCGAGATTCGGATTCGTGATGTAGTAGT 43517 || ||||| | || || ||| || || |||| ||||| || ||||||||| ||| Sbjct 27756 TTTCTTCCAGATACTCCGCGTCGACAGATCGGCCGATGTTCGGGTTTGTGATGTAGAAGT 27815 Query 43518 TGGCCGGATCGAGGTAGGCTTTCGACTTCACCATCTCTTCCGGAAACTCGTACAGCACGC 43577 | |||||| | || | | || || ||| | | |||||| || ||||||| || Sbjct 27816 TCTTGGGATCGCGAAAGCCATCGCTCTCCAACATTGCCTTCGGAAATTCATACAGCATGC 27875 Query 43578 CGAGCGACTTCCGG---TCGACGATTTTGCCGTCACGCACGTCGCGGTAGTACTGCAACT 43634 ||||| || ||| ||| |||||||||| || || | | |||| | | || || Sbjct 27876 CGAGC---TTGCGGCGATCGGCGATTTTGCCATCGCGGATGCCGCGAAACAGGTCCAGCT 27932 Query 43635 TCTCTTTGAACACACCGGCCGGCGGCTCGTCGCTTTGCGTTGTCAGGATGATGACCCACC 43694 | || |||||||| ||| ||| | |||||| || || | || |||||| ||| Sbjct 27933 TATCCTTGAACACGCCGCGCGGAGCTTCGTCGGAGTGGGTGGAAAGATAGATGACGAACC 27992 Query 43695 CTTCATCCCGCGACACCTGGCCTCCGGTCGCCTCCATGAACATCGCTTCTGCGTTCGCCC 43754 |||| ||||||| | || || || |||||||| | |||||| | || || | Sbjct 27993 CTTCCGGGCGCGACATCCTCCCGCCCGTGGCCTCCATCAGCATCGCCGCCGCCTTAGGGT 28052 Query 43755 TCTTGCCGAAGACCCAGTGCTCGTCGATAAGAATCTTTCCTGACTTCTTGCCCGATACCG 43814 |||||||||| ||| |||| |||| ||| || | | ||||||||| ||| Sbjct 28053 CTTTGCCGAAGAGCCACAGCTCTTCGACAAGGATGAAGGCAGCCTTCTTGCCACCAACCA 28112 Query 43815 TGTCAGTGTCGGCCGCAACCACCTTCAACGACGCTCGACTGACGCGGTGCGTTATCGTGC 43874 | | | || |||| || ||||||||| || || ||||| ||||| ||||||| Sbjct 28113 CGCCGGCATCTGCCGATACTACCTTCAACTCGGCATGAGTGACGAGGTGCTCGATCGTGC 28172 Query 43875 GGATGTGATCTTGGACATGAAACAGC-TCGG--ACAGCTCTGCATCGGCCCGGATCATCC 43931 | |||| || ||| | ||| || | ||| |||| |||||| |||| ||| | Sbjct 28173 GCTTGTGGTC---GACCGGCTTCAGGATCAGTAACAATTCTGGATCGGCGCGGACCATAC 28229 Query 43932 CCGCCGCCGGTTTGAAGCTGTTGTCCGCGACCTCCTTCGTCGGGGCGAGAATCAGGTGCT 43991 | ||||| || ||| ||| | |||| || | ||||| ||||| | ||| || Sbjct 28230 CAGCCGCTGGACCAAAGACGTTACCTGCGATTTCGATGGTCGGCGCGAGGACCAGCAACT 28289 Query 43992 CTTCTTCCTCGCGCCAACACAAAATGACCGCCGTCAGCATGATTCCGGCCGCGATCGTCG 44051 | | | | ||||| ||| | ||| || | |||||| || ||||||||||||| Sbjct 28290 CGGCGTAATGTCGCCAGTTGCGAATCAGCGCGGTGACCATGATGCCCGCCGCGATCGTCG 28349 Query 44052 ATTTCGTATTCTTCTTGCTGATCAGCAGAAAGAACTCGCGGATCAGTTGCTTGCCGGTTT 44111 |||||| |||||||||||||||||| || | |||||| | |||||| || ||||| | Sbjct 28350 ATTTCGCATTCTTCTTGCTGATCAGGAGCATGAACTCCCAGATCAGCCGCCGGCCGGCCT 28409 Query 44112 CGGCATCGTAGGCACCGAAAATGGC-CGCGACGAAATCGAAGACCCACTGCTCGCTGCAT 44170 | || || || || ||||| || || ||| ||||| ||||| || | | ||||| Sbjct 28410 CTGCGTCATATGCGCCGAAGATCGCACGC-ACGAAGTCGAAAACAAAATCCTCGCAAGCC 28468 Query 44171 TCGCCGAAGGTCGGCTTTCCCGGTAGGTCACAGACCCGCAGTTCCTTGAAGATCGCGACT 44230 ||||| || ||||||| |||| | || || |||||| |||||| | ||| Sbjct 28469 TCGCCAAACGTCGGCTGGCCCGCGATATCGACGATCCGCAGCGACTTGAATACTTCGAGC 28528 Query 44231 GCCTGCTCAGCCTGATCCGGGAAAATCGGCGGC 44263 ||| ||| |||| ||| ||| | |||||| Sbjct 28529 GCCGCCTCCGCCTCGTCCTCGAACAAAGGCGGC 28561 >seq121306 Length=32618 Score = 268 bits (296), Expect = 3e-67 Identities = 625/933 (67%), Gaps = 16/933 (2%) Strand=Plus/Plus Query 43339 CCAGAAGTCTGCGCCGGCCCACCGGTCGGACCGGAGGTTCATGCCGATCTCGACGTTGAG 43398 |||||| || || |||| ||| |||||| | ||| | | ||||||||||||||||| Sbjct 27637 CCAGAAATCGGCACCGGTCCAGCGGTCGCCCGCGAGCCGCGTTCCGATCTCGACGTTGAG 27696 Query 43399 GTGCTTCGCGATGAACTGCTGGAACGATCC-GTCAGTCTTGGTGCGGATCTTGTTGAGCT 43457 || ||||||| ||| ||| || | || | | | | | | || | ||||| Sbjct 27697 ATGTTTCGCGAGAAACATCTGCAAGGCCCCCGCCTCGCCGCCTTCCGC-CTCGGCGAGCT 27755 Query 43458 GGTCCTCCAGCCATTCGGCACTGACCGACCGCCCGAGATTCGGATTCGTGATGTAGTAGT 43517 || ||||| | || || ||| || || |||| ||||| || ||||||||| ||| Sbjct 27756 TTTCTTCCAGATACTCCGCGTCGACAGATCGGCCGATGTTCGGGTTTGTGATGTAGAAGT 27815 Query 43518 TGGCCGGATCGAGGTAGGCTTTCGACTTCACCATCTCTTCCGGAAACTCGTACAGCACGC 43577 | |||||| | || | | || || ||| | | |||||| || ||||||| || Sbjct 27816 TCTTGGGATCGCGAAAGCCATCGCTCTCCAACATTGCCTTCGGAAATTCATACAGCATGC 27875 Query 43578 CGAGCGACTTCCGG---TCGACGATTTTGCCGTCACGCACGTCGCGGTAGTACTGCAACT 43634 ||||| || ||| ||| |||||||||| || || | | |||| | | || || Sbjct 27876 CGAGC---TTGCGGCGATCGGCGATTTTGCCATCGCGGATGCCGCGAAACAGGTCCAGCT 27932 Query 43635 TCTCTTTGAACACACCGGCCGGCGGCTCGTCGCTTTGCGTTGTCAGGATGATGACCCACC 43694 | || |||||||| ||| ||| | |||||| || || | || |||||| ||| Sbjct 27933 TATCCTTGAACACGCCGCGCGGAGCTTCGTCGGAGTGGGTGGAAAGATAGATGACGAACC 27992 Query 43695 CTTCATCCCGCGACACCTGGCCTCCGGTCGCCTCCATGAACATCGCTTCTGCGTTCGCCC 43754 |||| ||||||| | || || || |||||||| | |||||| | || || | Sbjct 27993 CTTCCGGGCGCGACATCCTCCCGCCCGTGGCCTCCATCAGCATCGCCGCCGCCTTAGGGT 28052 Query 43755 TCTTGCCGAAGACCCAGTGCTCGTCGATAAGAATCTTTCCTGACTTCTTGCCCGATACCG 43814 |||||||||| ||| |||| |||| ||| || | | ||||||||| ||| Sbjct 28053 CTTTGCCGAAGAGCCACAGCTCTTCGACAAGGATGAAGGCAGCCTTCTTGCCACCAACCA 28112 Query 43815 TGTCAGTGTCGGCCGCAACCACCTTCAACGACGCTCGACTGACGCGGTGCGTTATCGTGC 43874 | | | || |||| || ||||||||| || || ||||| ||||| ||||||| Sbjct 28113 CGCCGGCATCTGCCGATACTACCTTCAACTCGGCATGAGTGACGAGGTGCTCGATCGTGC 28172 Query 43875 GGATGTGATCTTGGACATGAAACAGC-TCGG--ACAGCTCTGCATCGGCCCGGATCATCC 43931 | |||| || ||| | ||| || | ||| |||| |||||| |||| ||| | Sbjct 28173 GCTTGTGGTC---GACCGGCTTCAGGATCAGTAACAATTCTGGATCGGCGCGGACCATAC 28229 Query 43932 CCGCCGCCGGTTTGAAGCTGTTGTCCGCGACCTCCTTCGTCGGGGCGAGAATCAGGTGCT 43991 | ||||| || ||| ||| | |||| || | ||||| ||||| | ||| || Sbjct 28230 CAGCCGCTGGACCAAAGACGTTACCTGCGATTTCGATGGTCGGCGCGAGGACCAGCAACT 28289 Query 43992 CTTCTTCCTCGCGCCAACACAAAATGACCGCCGTCAGCATGATTCCGGCCGCGATCGTCG 44051 | | | | ||||| ||| | ||| || | |||||| || ||||||||||||| Sbjct 28290 CGGCGTAATGTCGCCAGTTGCGAATCAGCGCGGTGACCATGATGCCCGCCGCGATCGTCG 28349 Query 44052 ATTTCGTATTCTTCTTGCTGATCAGCAGAAAGAACTCGCGGATCAGTTGCTTGCCGGTTT 44111 |||||| |||||||||||||||||| || | |||||| | |||||| || ||||| | Sbjct 28350 ATTTCGCATTCTTCTTGCTGATCAGGAGCATGAACTCCCAGATCAGCCGCCGGCCGGCCT 28409 Query 44112 CGGCATCGTAGGCACCGAAAATGGC-CGCGACGAAATCGAAGACCCACTGCTCGCTGCAT 44170 | || || || || ||||| || || ||| ||||| ||||| || | | ||||| Sbjct 28410 CTGCGTCATATGCGCCGAAGATCGCACGC-ACGAAGTCGAAAACAAAATCCTCGCAAGCC 28468 Query 44171 TCGCCGAAGGTCGGCTTTCCCGGTAGGTCACAGACCCGCAGTTCCTTGAAGATCGCGACT 44230 ||||| || ||||||| |||| | || || |||||| |||||| | ||| Sbjct 28469 TCGCCAAACGTCGGCTGGCCCGCGATATCGACGATCCGCAGCGACTTGAATACTTCGAGC 28528 Query 44231 GCCTGCTCAGCCTGATCCGGGAAAATCGGCGGC 44263 ||| ||| |||| ||| ||| | |||||| Sbjct 28529 GCCGCCTCCGCCTCGTCCTCGAACAAAGGCGGC 28561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143085355560944