Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq48326 143 3e-29 seq9079 141 9e-29 seq74841 122 8e-23 seq176411 118 1e-21 seq4323 116 3e-21 seq2125 96.9 3e-15 >seq48326 Length=57257 Score = 143 bits (158), Expect = 3e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||| | ||||| || | ||| | ||| |||||||| ||||||||||| || Sbjct 53325 GCCACCGCGGAGCCGCAGGACGAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGA 53266 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||||| ||| || |||||||| || ||| |||| | ||||||||| |||||||| Sbjct 53265 TAGTGTGCGGCCGTCTTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCCGGAGG 53206 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| ||| || ||||| | || | || || ||| ||||| Sbjct 53205 AATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATTTTCAATGGTGTCACTGGGCTCGAC 53146 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 |||| || | |||||||||||| || || || || |||||||||||| Sbjct 53145 TTCGAGCGTGATGGTTTTACCGGTGAGTGTCTTGACAAAAATCTGCATG 53097 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||||| || || || | || | |||||||||||||||||||||||| || | Sbjct 53552 CCTCCGCGCAGCCGGAGGACAAGGTGAAGGGTCGACTCCTTTTGAATGTTGTAGTCAGAC 53493 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||| |||||||| ||||| || |||| | ||||||||| || || || Sbjct 53492 AGGGTACGGCCGTCTTCTAGCTGTTTGCCCGCAAAGATAAGACGCTGCTGATCAGGTGGA 53433 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||||||| ||| | | ||| | || || | | ||||| Sbjct 53432 ATCCCTTCCTTGTCCTGGATTTTCGCCTTCACGTTCTCAATCGTGTCACTCGGCTCGACC 53373 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | || || || || ||||| || |||||||| |||||| Sbjct 53372 TCCAGGGTGATCGTCTTGCCCGTCAGAGTCTTCACGAAAATTTGCATG 53325 Score = 116 bits (128), Expect = 3e-21 Identities = 142/193 (74%), Gaps = 3/193 (2%) Strand=Plus/Minus Query 131044 TCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAG 131103 || || |||||||||||||| || || || |||||| ||||||||||| ||| || Sbjct 52832 TCTTTCTGAATGTTGTAATCAGACAGCGTACG---GTCCTCAAGCTGCTTGCCGGCGAAG 52776 Query 131104 ATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGC 131163 || | |||||||||||| ||||| |||||||| ||||| |||||| ||||| | Sbjct 52775 ATCAGACGCTGCTGGTCAGGAGGAATTCCTTCCTTGTCCTGAATTTTCGCCTTGACATTT 52716 Query 131164 TCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACG 131223 || | ||| || | | ||| | |||| || | ||||| || || || || || || Sbjct 52715 TCAATAGTGTCACTAGGCTCAACTTCGAGCGTGATAGTTTTTCCCGTGAGTGTCTTCACA 52656 Query 131224 AAAATCTGCATGA 131236 ||||||||||||| Sbjct 52655 AAAATCTGCATGA 52643 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || || | ||||| || | || | |||||| ||||| ||||| ||||| ||| Sbjct 53781 GCCGCCACGAAGCCGCAGGACAAGGTGGAGGGTCGATTCCTTCTGAATATTGTAGTCGGA 53722 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | || ||| || || | |||||||||||| |||| | |||||| |||||||| || Sbjct 53721 GAGAGTACGCCCATCTTCCAACTGCTTGCCTGCAAAGATGAGACGCTGTTGGTCCGGTGG 53662 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || || ||||| |||||| ||| | | || | || ||| | | ||| | Sbjct 53661 AATGCCCTCCTTGTCCTGGATTTTAGCCTTCACATTTTCGATGGTGTCGCTAGGCTCAAC 53602 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || ||||| || || || ||||| |||||||| Sbjct 53601 CTCCAGGGTTATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 53554 Score = 98.7 bits (108), Expect = 9e-16 Identities = 163/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || || | |||||||| || || | ||| ||||| || || |||||||| || Sbjct 53097 GCCGCCACGAAGTCGCAGCACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCCGA 53038 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||||| |||||| ||||||||||| || |||| | |||||||||||| || || Sbjct 53037 AAGTGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGTGG 52978 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 ||||| || ||||| ||| || ||| || | | ||| | || ||| ||| || | Sbjct 52977 AATTCCCTCCTTGTCTTGGATCTT-TGCTTTTACGTTCTCGATCGTGTCGCTGGGTTCAA 52919 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACT 131238 || | || | || || || || | ||| || || || ||||||||| || Sbjct 52918 CTTCCAGCGTGATTGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCATGCCT 52866 >seq9079 Length=83715 Score = 141 bits (156), Expect = 9e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||||| || || || | || | |||||||||||||||||||||||| || | Sbjct 2652 CCTCCGCGCAGCCGGAGGACAAGGTGAAGGGTCGACTCCTTTTGAATGTTGTAGTCAGAC 2711 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||| |||||||| ||||| || |||| | ||| ||||| || || ||| Sbjct 2712 AGGGTGCGGCCGTCTTCTAGCTGTTTGCCCGCAAAGATAAGACGTTGCTGATCAGGTGGG 2771 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| |||||| ||||| | || | || || | | ||||| Sbjct 2772 ATCCCTTCCTTGTCCTGGATTTTTGCCTTGACATTTTCAATGGTGTCACTAGGCTCGACT 2831 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 |||| || | |||||||||||| || || || || |||||||||||| Sbjct 2832 TCGAGCGTGATGGTTTTACCGGTGAGTGTCTTGACAAAAATCTGCATG 2879 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||| | ||||| || | || | |||||| ||||| ||||| ||||| ||| Sbjct 2423 GCCACCGCGAAGCCGCAGGACAAGGTGGAGGGTCGATTCCTTCTGAATATTGTAGTCGGA 2482 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | |||||| |||||| | |||||||||||| |||| | |||||| |||||||| || Sbjct 2483 GAGAGTGCGCCCGTCCTCCAACTGCTTGCCTGCAAAGATGAGACGCTGTTGGTCCGGTGG 2542 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || || ||||| |||||| ||| | | || | || ||| | | ||| | Sbjct 2543 AATGCCCTCCTTGTCCTGGATTTTAGCCTTCACATTTTCGATGGTGTCGCTAGGCTCAAC 2602 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || ||||| || || || ||||| |||||||| Sbjct 2603 CTCTAGGGTTATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 2650 Score = 120 bits (132), Expect = 3e-22 Identities = 168/233 (72%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| ||||| | |||||||| || |||| ||| ||||| || ||||||||||| || Sbjct 2879 GCCGCCGCGAAGTCGCAGCACCAAGTGTAGGGTGGACTCTTTCTGAATGTTGTAGTCTGA 2938 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||||| |||||| ||||||||||| || |||| | |||||||||||| || || Sbjct 2939 GAGTGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCAGGTGG 2998 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 ||| || || ||||| ||| || ||| |||| | ||| | || || ||| || | Sbjct 2999 GATACCCTCCTTGTCTTGGATCTT-TGCTTTGACGTTCTCGATCGTGTCACTGGGTTCAA 3057 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACT 131238 || | || | ||||| || || | ||| || ||||| ||||||||| || Sbjct 3058 CTTCTAGCGTGATCGTTTTGCCAGTCAAAGTCTTGACGAAGATCTGCATGCCT 3110 Score = 114 bits (126), Expect = 1e-20 Identities = 141/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 131044 TCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAG 131103 || || |||||||||||||| || || || |||||| ||||||||||| ||| || Sbjct 3372 TCTTTCTGAATGTTGTAATCAGACAGCGTACGGCCGTCCTCAAGCTGCTTGCCGGCGAAG 3431 Query 131104 ATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGC 131163 || | |||||||||||| ||||| |||||||| ||||| |||||| ||||| | Sbjct 3432 ATCAGACGCTGCTGGTCAGGAGGAATTCCTTCCTTGTCCTGAATTTTCGCCTTGACATTT 3491 Query 131164 TCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACG 131223 || | || || | | ||| | |||| || | ||||| || || || || || || Sbjct 3492 TCAATGGTGTCACTCGGCTCAACTTCGAGCGTGATAGTTTTTCCCGTGAGTGTCTTCACA 3551 Query 131224 AAAATCTGCATGA 131236 ||||||||||||| Sbjct 3552 AAAATCTGCATGA 3564 >seq74841 Length=4471 Score = 122 bits (134), Expect = 8e-23 Identities = 166/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | ||||| || | || | |||||| ||||| ||||||||||||||| Sbjct 3216 GCCACCACGGAGCCGCAGGACAAGGTGGAGGGTCGATTCCTTCTGAATGTTGTAATCGGA 3157 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||||| |||||| | |||||||||||| |||| | |||||| ||||| || || Sbjct 3156 GAGAGTGCGGCCGTCCTCCAACTGCTTGCCTGCAAAGATGAGACGCTGTTGGTCTGGTGG 3097 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || || ||||| |||||| ||| | | | | || ||| ||| ||||| Sbjct 3096 AATGCCCTCCTTGTCCTGGATTTTAGCCTTCACATTTTTGATGGTGTCGCTGGGCTCGAC 3037 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACT 131238 || | ||| | ||| || ||||| || || || ||||| || |||||| || Sbjct 3036 CTCCAGGGTTATGGTCTTGCCGGTGAGGGTCTTAACGAAGATTTGCATGCCT 2985 Score = 113 bits (124), Expect = 4e-20 Identities = 106/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| ||||||| || || || | || | ||| |||||||||||||||||||| || Sbjct 2988 GCCTCCGCGCAGCCGGAGGACGAGGTGAAGGGTAGACTCCTTTTGAATGTTGTAGTCCGA 2929 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | |||||| ||| || ||||||||||| ||| | || | |||||||||||||||||| Sbjct 2928 GAGGGTGCGGCCGTCTTCGAGCTGCTTGCCGGCGAAAATAAGACGCTGCTGGTCCGGAGG 2869 Query 131127 GATTCCTTCTTTGTC 131141 || ||||||||||| Sbjct 2868 AATGCCTTCTTTGTC 2854 >seq176411 Length=6678 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | ||||| || | || | |||||| ||||| ||||||||||||||| Sbjct 4798 GCCACCACGGAGCCGCAGGACAAGGTGGAGGGTCGATTCCTTCTGAATGTTGTAATCGGC 4857 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||||| |||||| | |||||||||||| |||| | |||||| ||||| || || Sbjct 4858 GAGAGTGCGGCCGTCCTCCAACTGCTTGCCTGCAAAGATGAGACGCTGTTGGTCTGGTGG 4917 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || || ||||| |||||| ||| | | | | || ||| ||| ||||| Sbjct 4918 AATGCCCTCCTTGTCCTGGATTTTAGCCTTCACATTTTTGATGGTGTCGCTGGGCTCGAC 4977 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || ||||| || || || ||||| || ||||| Sbjct 4978 CTCCAGGGTTATGGTCTTGCCGGTGAGGGTCTTAACGAAGATTTGCAT 5025 >seq4323 Length=113087 Score = 116 bits (128), Expect = 3e-21 Identities = 165/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | || || || | || | |||||| ||||| ||||||||||||||| Sbjct 36895 GCCACCACGGAGCCGGAGGACAAGGTGGAGGGTCGATTCCTTCTGAATGTTGTAATCGGA 36954 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||||| |||||| | |||||||||||| |||| | |||||| ||||| || || Sbjct 36955 GAGAGTGCGGCCGTCCTCCAACTGCTTGCCTGCAAAGATGAGACGCTGTTGGTCTGGTGG 37014 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || || ||||| |||||| ||| | | | | || ||| ||| ||||| Sbjct 37015 AATGCCCTCCTTGTCCTGGATTTTAGCCTTCACATTTTTGATGGTGTCGCTGGGCTCGAC 37074 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACT 131238 || | ||| | ||| || ||||| || || || ||||| || |||||| || Sbjct 37075 CTCCAGGGTTATGGTCTTGCCGGTGAGGGTCTTAACGAAGATTTGCATGCCT 37126 Score = 113 bits (124), Expect = 4e-20 Identities = 106/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| ||||||| || || || | || | ||| |||||||||||||||||||| || Sbjct 37123 GCCTCCGCGCAGCCGGAGGACGAGGTGAAGGGTAGACTCCTTTTGAATGTTGTAGTCCGA 37182 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | |||||| ||| || ||||||||||| ||| | || | |||||||||||||||||| Sbjct 37183 GAGGGTGCGGCCGTCTTCGAGCTGCTTGCCGGCGAAAATAAGACGCTGCTGGTCCGGAGG 37242 Query 131127 GATTCCTTCTTTGTC 131141 || ||||||||||| Sbjct 37243 AATGCCTTCTTTGTC 37257 >seq2125 Length=82343 Score = 96.9 bits (106), Expect = 3e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| |||||||| | || | ||||||||| || || |||||||| || | Sbjct 75952 CCACCACGCAGCCGCAGCACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCCGAC 76011 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||||| || || ||||||||||| || |||| | |||||||||||| || ||| Sbjct 76012 AGGGTGCGCCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCGGGCGGG 76071 Query 131128 ATTCCT 131133 || ||| Sbjct 76072 ATACCT 76077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 470861773186560