Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_008187.1 Length=191100 Score E Sequences producing significant alignments: (Bits) Value seq3624 89.7 6e-13 >seq3624 Length=53740 Score = 89.7 bits (98), Expect = 6e-13 Identities = 143/203 (70%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 126179 TGGTGTAAATGTAGCGGGGAGCTG-CCGAATCCTTGCCTCCCTCCAACCGCGTGCCAAAC 126237 ||||| | || || || || |||| ||| |||||||| |||| || || ||||||||| Sbjct 4436 TGGTGAAGATATATCGAGG-GCTGGCCGCGTCCTTGCCACCCTGCAGCCTTGTGCCAAAC 4494 Query 126238 TGACCGTCCGGCTCCAACAACTGCACATTGTTGGCTCCCACAAAGTCCTGCGCAAACTTG 126297 |||||| |||| || || | | |||||||| || ||||| | |||||| || ||| Sbjct 4495 TGACCGATTGGCTGCAGCAGGTTGATATTGTTGGAGCCGACAAAATTCTGCGCCAAGTTG 4554 Query 126298 ACAATGGTCTCGCACAGGTTCTGCTCGCCGTGCTTGTAGTCGGTCTGCTCGGCCACGTAG 126357 | |||||| ||| ||||||||| | || | | |||||||||||| | Sbjct 4555 ATGATGGTCGACATTAGGGAGGCCTCGCCGTGATGATACGCAGAATGCTCGGCCACGGAC 4614 Query 126358 CCGCTCAGCTGCGCAACCTTGAT 126380 || |||||| || ||||| || Sbjct 4615 CCTGCCAGCTGGGCGACCTTAAT 4637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 609901090038400