Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq48326 129 5e-25 seq9079 113 4e-20 seq176411 105 6e-18 seq74841 100 2e-16 seq4323 100 2e-16 >seq48326 Length=57257 Score = 129 bits (142), Expect = 5e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || |||||| |||| || || | ||||| | || || ||| || | Sbjct 53326 ATGCAAATTTTCGTGAAGACTCTGACGGGCAAGACGATCACCCTGGAGGTCGAGCCGAGT 53385 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| ||||| |||||| ||||| ||||||||||||||||| || Sbjct 53386 GACACGATTGAGAACGTGAAGGCGAAAATCCAGGACAAGGAAGGGATTCCACCTGATCAG 53445 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| |||| ||||| |||||||| ||||||| | || || || || ||||| Sbjct 53446 CAGCGTCTTATCTTTGCGGGCAAACAGCTAGAAGACGGCCGTACCCTGTCTGACTACAAC 53505 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 |||||||| || || || || || | || || |||| | ||||||| Sbjct 53506 ATTCAAAAGGAGTCGACCCTTCACCTTGTCCTCCGGCTGCGCGGAGGAA 53554 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24992 CGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGA 25051 |||| |||||| || || || ||||| | ||||| || |||| || | || || || Sbjct 53547 CGGAGGAATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATAACCCTGGAGGTTGA 53606 Query 25052 GTCGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACC 25111 | | ||||| ||||| ||||| |||||| ||||| || || |||||||| Sbjct 53607 GCCTAGCGACACCATCGAAAATGTGAAGGCTAAAATCCAGGACAAGGAGGGCATTCCACC 53666 Query 25112 TGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGA 25171 ||||||||||| | || ||||| ||||| || || ||||||| || ||| | ||| Sbjct 53667 GGACCAACAGCGTCTCATCTTTGCAGGCAAGCAGTTGGAAGATGGGCGTACTCTCTCCGA 53726 Query 25172 TTACAATATTCAAAAAGAATCCACGCTACA 25201 ||||||||||| || ||||| || || || Sbjct 53727 CTACAATATTCAGAAGGAATCGACCCTCCA 53756 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||||||||| || || | ||||| | ||||| || | Sbjct 52870 ATGCAGATCTTTGTCAAGACTTTGACTGGCAAGACAATCACGCTGGAAGTTGAACCCAGC 52929 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| | || ||| ||| ||||| || || |||||||| ||||| Sbjct 52930 GACACGATCGAGAACGTAAAAGCAAAGATCCAAGACAAGGAGGGAATTCCACCAGACCAG 52989 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||||||||| || | || || | ||||| | || ||||| Sbjct 52990 CAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACACTTTCGGACTACAAC 53049 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || ||||| ||||| || || || ||||| Sbjct 53050 ATCCAGAAAGAGTCCACCCTCCACTTGGTGCT 53081 >seq9079 Length=83715 Score = 113 bits (124), Expect = 4e-20 Identities = 156/216 (72%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||||||||| || ||| | ||||| | ||||| || | | Sbjct 3106 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAAACGATCACGCTAGAAGTTGAACCCAGT 3047 Query 25059 GACACTATCGAG----TCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| |||||| ||| ||||||| | || ||||| || || || |||||||| Sbjct 3046 GACACGATCGAGAACGTCA---AAGCAAAGATCCAA-GACAAGGAGGGTATCCCACCTGA 2991 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||||| | || ||||||||||| || | || || | ||||| | || || Sbjct 2990 CCAGCAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACACTCTCAGACTA 2931 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| ||||| ||||| ||||| ||||| || ||||| Sbjct 2930 CAACATTCAGAAAGAGTCCACCCTACACTTGGTGCT 2895 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 24992 CGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGA 25051 |||| |||||| || || || ||||| | ||||| || |||| || | || || || Sbjct 2657 CGGAGGAATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATAACCCTAGAGGTTGA 2598 Query 25052 GTCGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACC 25111 | | ||||| ||||| ||||| |||||| ||||| || || |||||||| Sbjct 2597 GCCTAGCGACACCATCGAAAATGTGAAGGCTAAAATCCAGGACAAGGAGGGCATTCCACC 2538 Query 25112 TGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGA 25171 ||||||||||| | || ||||| ||||| || || || || | |||||| | ||| Sbjct 2537 GGACCAACAGCGTCTCATCTTTGCAGGCAAGCAGTTGGAGGACGGGCGCACTCTCTCCGA 2478 Query 25172 TTACAATATTCAAAAAGAATCCACGCTACA 25201 ||||||||||| || ||||| || || || Sbjct 2477 CTACAATATTCAGAAGGAATCGACCCTCCA 2448 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||||||||| || || | ||||| | ||||| || | Sbjct 3334 ATGCAGATCTTTGTCAAGACTTTGACTGGCAAGACGATCACGCTGGAAGTTGAACCCAGC 3275 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| | || ||| ||| ||||| || || |||||||| ||||| Sbjct 3274 GACACGATCGAGAACGTAAAAGCAAAGATCCAAGACAAGGAGGGAATTCCACCAGACCAG 3215 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||| |||||||| | || || | || || | || ||||| Sbjct 3214 CAGCGTCTCATCTTTGCTGGCAAACAGCTCGAGGACGGCCGTACACTCTCAGACTACAAC 3155 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||| ||||| ||||| || || | |||||| |||| | ||||| Sbjct 3154 ATTCAGAAAGAGTCCACTCTTCACCTTGTGCTACGGCTTCGTGGAGG 3108 >seq176411 Length=6678 Score = 105 bits (116), Expect = 6e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| | ||||| || |||| || | || || ||| | Sbjct 5025 ATGCAAATCTTCGTTAAGACCCTCACCGGCAAGACCATAACCCTGGAGGTCGAGCCCAGC 4966 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||| | ||||| |||||| ||||| || || |||||||| |||||| Sbjct 4965 GACACCATCAAAAATGTGAAGGCTAAAATCCAGGACAAGGAGGGCATTCCACCAGACCAA 4906 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||| ||||| || || || || | |||||| | | ||||||||| Sbjct 4905 CAGCGTCTCATCTTTGCAGGCAAGCAGTTGGAGGACGGCCGCACTCTCGCCGATTACAAC 4846 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 ||||| || ||||| || || || Sbjct 4845 ATTCAGAAGGAATCGACCCTCCA 4823 >seq74841 Length=4471 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| | ||||| || |||| || | || || ||| | Sbjct 2989 ATGCAAATCTTCGTTAAGACCCTCACCGGCAAGACCATAACCCTGGAGGTCGAGCCCAGC 3048 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||| | ||||| |||||| ||||| || || |||||||| |||||| Sbjct 3049 GACACCATCAAAAATGTGAAGGCTAAAATCCAGGACAAGGAGGGCATTCCACCAGACCAA 3108 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||| ||||| || || || || | |||||| | ||||||||| Sbjct 3109 CAGCGTCTCATCTTTGCAGGCAAGCAGTTGGAGGACGGCCGCACTCTCTCCGATTACAAC 3168 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 ||||| || ||||| || || || Sbjct 3169 ATTCAGAAGGAATCGACCCTCCA 3191 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/152 (73%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 25075 TGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTT 25133 ||||| | |||| ||| ||||||||||| ||||| || ||||| ||||| ||||||| Sbjct 2837 TGAAGGCCAAAATTCAG-GACAAAGAAGGCATTCCTCCGGACCAGCAGCGTCTTATTTTC 2895 Query 25134 GCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCC 25193 |||||||| || | ||||| | ||||| | || ||||| |||||||| || || Sbjct 2896 GCCGGCAAGCAGCTCGAAGACGGCCGCACCCTCTCGGACTACAACATTCAAAAGGAGTCT 2955 Query 25194 ACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || | || || |||| | ||||| Sbjct 2956 ACCCTTCACCTCGTCCTCCGGCTGCGCGGAGG 2987 >seq4323 Length=113087 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| | ||||| || |||| || | || || ||| | Sbjct 37122 ATGCAAATCTTCGTTAAGACCCTCACCGGCAAGACCATAACCCTGGAGGTCGAGCCCAGC 37063 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||| | ||||| |||||| ||||| || || |||||||| |||||| Sbjct 37062 GACACCATCAAAAATGTGAAGGCTAAAATCCAGGACAAGGAGGGCATTCCACCAGACCAA 37003 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||| ||||| || || || || | |||||| | ||||||||| Sbjct 37002 CAGCGTCTCATCTTTGCAGGCAAGCAGTTGGAGGACGGCCGCACTCTCTCCGATTACAAC 36943 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 ||||| || ||||| || || || Sbjct 36942 ATTCAGAAGGAATCGACCCTCCA 36920 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/152 (73%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 25075 TGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTT 25133 ||||| | |||| ||| ||||||||||| ||||| || ||||| ||||| ||||||| Sbjct 37274 TGAAGGCCAAAATTCAG-GACAAAGAAGGCATTCCTCCGGACCAGCAGCGTCTTATTTTC 37216 Query 25134 GCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCC 25193 |||||||| || | ||||| | ||||| | || ||||| |||||||| || || Sbjct 37215 GCCGGCAAGCAGCTCGAAGACGGCCGCACCCTCTCGGACTACAACATTCAAAAGGAGTCT 37156 Query 25194 ACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || | || || |||| | ||||| Sbjct 37155 ACCCTTCACCTCGTCCTCCGGCTGCGCGGAGG 37124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432297725305460