Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq46855 102 9e-17 seq60671 96.9 4e-15 >seq46855 Length=43320 Score = 102 bits (112), Expect = 9e-17 Identities = 76/88 (86%), Gaps = 6/88 (7%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGAG 126321 |||||| ||||||||||||||||||||||||||||||| |||||| |||| | | | Sbjct 21459 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGT--CCTCGTAAGAGGG 21402 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAA 126349 |||||||||||||||||| |||||||| Sbjct 21401 CGTGGGTTCGAACCCCACTTCTGACAAA 21374 >seq60671 Length=73969 Score = 96.9 bits (106), Expect = 4e-15 Identities = 75/88 (85%), Gaps = 6/88 (7%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGAG 126321 |||||| | ||||||||||||||||||||||||||||| |||||| |||| | | | Sbjct 20102 GTCAGGATAGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGT--CCTCGTAAGAGGG 20045 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAA 126349 |||||||||||||||||| |||||||| Sbjct 20044 CGTGGGTTCGAACCCCACTTCTGACAAA 20017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555502867096160