Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq9079 167 2e-36 seq48326 143 2e-29 seq74841 136 3e-27 seq4323 136 3e-27 seq176411 134 1e-26 >seq9079 Length=83715 Score = 167 bits (184), Expect = 2e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||||| || || |||||| |||| || ||||| ||| ||| Sbjct 3106 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAAACGATCACGCTAGAAGTTGAACCCAGT 3047 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | ||||| ||| || ||||||||||||||||| ||||| || || Sbjct 3046 GACACGATCGAGAACGTCAAAGCAAAGATCCAAGACAAGGAGGGTATCCCACCTGACCAG 2987 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||||||||| ||| | ||||| |||||| |||| || |||||| Sbjct 2986 CAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACACTCTCAGACTACAAC 2927 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| ||||| |||||| |||| || || ||||| | ||||| || Sbjct 2926 ATTCAGAAAGAGTCCACCCTACACTTGGTGCTGCGACTTCGCGGCGG 2880 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| || || | ||||||||||| |||| || ||||| || | | Sbjct 2878 ATGCAGATTTTTGTCAAGACACTCACCGGTAAAACCATCACGCTCGAAGTCGAGCCTAGT 2819 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| |||||| || |||||||| || || ||||| ||||| Sbjct 2818 GACACCATTGAAAATGTCAAGGCAAAAATCCAGGACAAGGAAGGGATCCCACCTGATCAG 2759 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||||||||| ||||| ||||||||| |||| || ||||||| | || || |||||| Sbjct 2758 CAACGTCTTATCTTTGCGGGCAAACAGCTAGAAGACGGCCGCACCCTGTCTGACTACAAC 2699 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 |||||||| || || ||| | || | || | || |||||||||| Sbjct 2698 ATTCAAAAGGAGTCGACCCTTCACCTTGTCCTCCGGCTGCGCGGAGG 2652 Score = 143 bits (158), Expect = 2e-29 Identities = 150/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || ||||| || || || ||| |||| || ||||| ||| ||| | Sbjct 3334 ATGCAGATCTTTGTCAAGACTTTGACTGGCAAGACGATCACGCTGGAAGTTGAACCCAGC 3275 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | | ||| ||| || |||||||||||||| |||||||| || || Sbjct 3274 GACACGATCGAGAACGTAAAAGCAAAGATCCAAGACAAGGAGGGAATTCCACCAGACCAG 3215 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||| ||||||||| | ||||| ||| || |||| || |||||| Sbjct 3214 CAGCGTCTCATCTTTGCTGGCAAACAGCTCGAGGACGGCCGTACACTCTCAGACTACAAC 3155 Query 22399 ATTCAAAAAGAATCCAC 22415 ||||| ||||| ||||| Sbjct 3154 ATTCAGAAAGAGTCCAC 3138 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || | || || || || || | | | Sbjct 2650 ATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATAACCCTAGAGGTTGAGCCTAGC 2591 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || ||||| || ||||||||||| |||||||| || ||| Sbjct 2590 GACACCATCGAAAATGTGAAGGCTAAAATCCAGGACAAGGAGGGCATTCCACCGGACCAA 2531 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||| ||||| ||||| ||||| ||||| ||||||| ||||| Sbjct 2530 CAGCGTCTCATCTTTGCAGGCAAGCAGTTGGAGGACGGGCGCACTCTCTCCGACTACAAT 2471 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || ||||| ||| | || | || |||| | ||||| || Sbjct 2470 ATTCAGAAGGAATCGACCCTCCACCTTGTCCTGCGGCTTCGCGGTGG 2424 Score = 116 bits (128), Expect = 3e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| || || | || || ||||| |||| || ||||| || | | Sbjct 3562 ATGCAGATTTTTGTGAAGACACTCACGGGAAAAACTATCACGCTCGAAGTTGAGCCGAGT 3503 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| |||||||| |||||||| || ||||| || || || Sbjct 3502 GACACCATTGAAAATGTCAAGGCGAAAATTCAGGACAAGGAAGGAATTCCTCCTGACCAG 3443 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || |||||||| ||| | ||||| ||| || | || ||||||||| Sbjct 3442 CAGCGTCTGATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGTACGCTGTCTGATTACAAC 3383 Query 22399 ATTCAAAAAGAA 22410 ||||| |||||| Sbjct 3382 ATTCAGAAAGAA 3371 >seq48326 Length=57257 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || ||||| || || || || |||| || ||||| ||| ||| | Sbjct 52870 ATGCAGATCTTTGTCAAGACTTTGACTGGCAAGACAATCACGCTGGAAGTTGAACCCAGC 52929 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | | ||| ||| || |||||||||||||| |||||||| || || Sbjct 52930 GACACGATCGAGAACGTAAAAGCAAAGATCCAAGACAAGGAGGGAATTCCACCAGACCAG 52989 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||||||||| ||| | ||||| |||||| | || || |||||| Sbjct 52990 CAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACACTTTCGGACTACAAC 53049 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || ||||| |||||| | || || || ||||| | || || || Sbjct 53050 ATCCAGAAAGAGTCCACCCTCCACTTGGTGCTGCGACTTCGTGGCGG 53096 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| || || | ||||||||||| |||| || ||||| || ||| Sbjct 53098 ATGCAGATTTTTGTCAAGACACTCACCGGTAAAACCATCACGCTCGAAGTCGAGCCCAGT 53157 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| ||| || || |||||||| || ||||| || ||||| Sbjct 53158 GACACCATTGAAAATGTCAAGGCAAAGATCCAGGACAAGGAAGGCATTCCTCCGGATCAG 53217 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || ||||| || ||| | || || |||||| | || || |||||| Sbjct 53218 CAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAAGACGGCCGCACACTATCTGACTACAAC 53277 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || || |||||| | ||| | || |||| | ||||| || Sbjct 53278 ATTCAGAAGGAGTCCACCCTTCATCTCGTCCTGCGGCTCCGCGGTGG 53324 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || ||| | || || || ||| |||| || || || || | | Sbjct 53326 ATGCAAATTTTCGTGAAGACTCTGACGGGCAAGACGATCACCCTGGAGGTCGAGCCGAGT 53385 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | | || ||||| || |||||||| || |||||||| ||||| Sbjct 53386 GACACGATTGAGAACGTGAAGGCGAAAATCCAGGACAAGGAAGGGATTCCACCTGATCAG 53445 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || |||||||| ||||| ||||||||| |||| || ||| ||| | || || |||||| Sbjct 53446 CAGCGTCTTATCTTTGCGGGCAAACAGCTAGAAGACGGCCGTACCCTGTCTGACTACAAC 53505 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 |||||||| || || ||| | || | || | || |||||||||| Sbjct 53506 ATTCAAAAGGAGTCGACCCTTCACCTTGTCCTCCGGCTGCGCGGAGG 53552 Score = 111 bits (122), Expect = 1e-19 Identities = 140/192 (73%), Gaps = 3/192 (2%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| || || | || || ||||| |||| || ||||| || | | Sbjct 52645 ATGCAGATTTTTGTGAAGACACTCACGGGAAAAACTATCACGCTCGAAGTTGAGCCTAGT 52704 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || |||| |||||||| |||||||| || ||||| || || || Sbjct 52705 GACACTATTGAAAATGTCAAGGCGAAAATTCAGGACAAGGAAGGAATTCCTCCTGACCAG 52764 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || |||||||| ||| | ||||| ||| || | || ||||||||| Sbjct 52765 CAGCGTCTGATCTTCGCCGGCAAGCAGCTTGAGGA---CCGTACGCTGTCTGATTACAAC 52821 Query 22399 ATTCAAAAAGAA 22410 ||||| |||||| Sbjct 52822 ATTCAGAAAGAA 52833 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || | || || || || || | | | Sbjct 53554 ATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATAACCCTGGAGGTTGAGCCTAGC 53613 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || ||||| || ||||||||||| |||||||| || ||| Sbjct 53614 GACACCATCGAAAATGTGAAGGCTAAAATCCAGGACAAGGAGGGCATTCCACCGGACCAA 53673 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||| ||||| ||||| || ||| || || ||||||| ||||| Sbjct 53674 CAGCGTCTCATCTTTGCAGGCAAGCAGTTGGAAGATGGGCGTACTCTCTCCGACTACAAT 53733 Query 22399 ATTCAAAAAGAATCCACC 22416 ||||| || ||||| ||| Sbjct 53734 ATTCAGAAGGAATCGACC 53751 >seq74841 Length=4471 Score = 136 bits (150), Expect = 3e-27 Identities = 149/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || ||||| || | ||||| || || | || || || || || ||| | Sbjct 2989 ATGCAAATCTTCGTTAAGACCCTCACCGGCAAGACCATAACCCTGGAGGTCGAGCCCAGC 3048 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | | || | || ||||| || ||||||||||| |||||||| || ||| Sbjct 3049 GACACCATCAAAAATGTGAAGGCTAAAATCCAGGACAAGGAGGGCATTCCACCAGACCAA 3108 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||| ||||| ||||| ||||| |||||| |||||||||||||| Sbjct 3109 CAGCGTCTCATCTTTGCAGGCAAGCAGTTGGAGGACGGCCGCACTCTCTCCGATTACAAC 3168 Query 22399 ATTCAAAAAGAATCCACC 22416 ||||| || ||||| ||| Sbjct 3169 ATTCAGAAGGAATCGACC 3186 Score = 105 bits (116), Expect = 6e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 |||||||| ||||| || || ||||| || || || || |||||||| || |||||||| Sbjct 2845 AAAATTCAGGACAAAGAAGGCATTCCTCCGGACCAGCAGCGTCTTATTTTCGCCGGCAAG 2904 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | || || ||||||| |||| || |||||||||||||| || || ||| | || Sbjct 2905 CAGCTCGAAGACGGCCGCACCCTCTCGGACTACAACATTCAAAAGGAGTCTACCCTTCAC 2964 Query 22423 TTAGTTTTGCGATTGCGCGGAGG 22445 | || | || |||||||||| Sbjct 2965 CTCGTCCTCCGGCTGCGCGGAGG 2987 >seq4323 Length=113087 Score = 136 bits (150), Expect = 3e-27 Identities = 149/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || ||||| || | ||||| || || | || || || || || ||| | Sbjct 37122 ATGCAAATCTTCGTTAAGACCCTCACCGGCAAGACCATAACCCTGGAGGTCGAGCCCAGC 37063 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | | || | || ||||| || ||||||||||| |||||||| || ||| Sbjct 37062 GACACCATCAAAAATGTGAAGGCTAAAATCCAGGACAAGGAGGGCATTCCACCAGACCAA 37003 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||| ||||| ||||| ||||| |||||| |||||||||||||| Sbjct 37002 CAGCGTCTCATCTTTGCAGGCAAGCAGTTGGAGGACGGCCGCACTCTCTCCGATTACAAC 36943 Query 22399 ATTCAAAAAGAATCCACC 22416 ||||| || ||||| ||| Sbjct 36942 ATTCAGAAGGAATCGACC 36925 Score = 105 bits (116), Expect = 6e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 |||||||| ||||| || || ||||| || || || || |||||||| || |||||||| Sbjct 37266 AAAATTCAGGACAAAGAAGGCATTCCTCCGGACCAGCAGCGTCTTATTTTCGCCGGCAAG 37207 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | || || ||||||| |||| || |||||||||||||| || || ||| | || Sbjct 37206 CAGCTCGAAGACGGCCGCACCCTCTCGGACTACAACATTCAAAAGGAGTCTACCCTTCAC 37147 Query 22423 TTAGTTTTGCGATTGCGCGGAGG 22445 | || | || |||||||||| Sbjct 37146 CTCGTCCTCCGGCTGCGCGGAGG 37124 >seq176411 Length=6678 Score = 134 bits (148), Expect = 1e-26 Identities = 149/199 (75%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 ||||||||| || ||||| || | ||||| || || | || || || || || ||| Sbjct 5026 GATGCAAATCTTCGTTAAGACCCTCACCGGCAAGACCATAACCCTGGAGGTCGAGCCCAG 4967 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||| ||| | | || | || ||||| || ||||||||||| |||||||| || || Sbjct 4966 CGACACCATCAAAAATGTGAAGGCTAAAATCCAGGACAAGGAGGGCATTCCACCAGACCA 4907 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 ||| ||||| || ||||| ||||| ||||| ||||| |||||| || |||||||||| Sbjct 4906 ACAGCGTCTCATCTTTGCAGGCAAGCAGTTGGAGGACGGCCGCACTCTCGCCGATTACAA 4847 Query 22398 CATTCAAAAAGAATCCACC 22416 |||||| || ||||| ||| Sbjct 4846 CATTCAGAAGGAATCGACC 4828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418730060478460