Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq48326 120 3e-22 seq9079 120 3e-22 seq74841 102 7e-17 seq4323 102 7e-17 seq176411 98.7 8e-16 >seq48326 Length=57257 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || || || || | || || | ||| | || || || || ||||||||||| || Sbjct 53327 ATGCCACCGCGGAGCCGCAGGACGAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCA 53268 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || ||||| || || || || ||| ||||||||||||| || |||||| Sbjct 53267 GATAGTGTGCGGCCGTCTTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCCGGA 53208 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| ||||| |||||| || | | ||||| |||||| ||| ||| Sbjct 53207 GGAATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATTTTCAATGGTGTCACTGGGCTCG 53148 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || | || | ||||| ||||| || || || ||||||||||||||| Sbjct 53147 ACTTCGAGCGTGATGGTTTTACCGGTGAGTGTCTTGACAAAAATCTGCATG 53097 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 |||||||| || | || || | || | || ||||| || ||||| ||||| ||| Sbjct 53780 CCGCCACGAAGCCGCAGGACAAGGTGGAGGGTCGATTCCTTCTGAATATTGTAGTCGGAG 53721 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | |||||| |||||| | || || || || |||||||||||||||||||||| ||| Sbjct 53720 AGAGTACGCCCATCTTCCAACTGCTTGCCTGCAAAGATGAGACGCTGTTGGTCCGGTGGA 53661 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 ||||| || ||||| || || || | | ||| | ||||||| | | || || Sbjct 53660 ATGCCCTCCTTGTCCTGGATTTTAGCCTTCACATTTTCGATGGTGTCGCTAGGCTCAACC 53601 Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 |||| ||| | || |||||||| || || || || || |||||||| Sbjct 53600 TCCAGGGTTATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 53554 Score = 111 bits (122), Expect = 1e-19 Identities = 165/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || |||||||| |||| || || || || | || || ||||| || |||||||| || Sbjct 53099 ATGCCGCCACGAAGTCGCAGCACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCC 53040 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || || || || || || || || ||||||||||||| ||||| || Sbjct 53039 GAAAGTGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGT 52980 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || || ||||| |||||| ||||| | || | |||||| ||| ||| Sbjct 52979 GGAATTCCCTCCTTGTCTTGGATCTTTGCTTTTACGTTCTCGATCGTGTCGCTGGGTTCA 52920 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 114386 || |||| || | || ||||| |||| ||| || ||||| ||||||||| || Sbjct 52919 ACTTCCAGCGTGATTGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCATGCCT 52866 Score = 104 bits (114), Expect = 2e-17 Identities = 139/193 (72%), Gaps = 3/193 (2%) Strand=Plus/Minus Query 114191 TTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTA 114250 |||||| |||||||||||||| || ||||| || ||||| || || || ||| | Sbjct 52833 TTCTTTCTGAATGTTGTAATCAGACAGCGTACGG---TCCTCAAGCTGCTTGCCGGCGAA 52777 Query 114251 GATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTG 114310 ||| |||||||| ||||| |||||||| ||||| ||||| ||| || || | | Sbjct 52776 GATCAGACGCTGCTGGTCAGGAGGAATTCCTTCCTTGTCCTGAATTTTCGCCTTGACATT 52717 Query 114311 TTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 114370 ||||| ||||| | | || || || | || | ||||| || || || || || || Sbjct 52716 TTCAATAGTGTCACTAGGCTCAACTTCGAGCGTGATAGTTTTTCCCGTGAGTGTCTTCAC 52657 Query 114371 AAAAATCTGCATG 114383 ||||||||||||| Sbjct 52656 AAAAATCTGCATG 52644 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || |||||||||||||| || || ||||| ||||| || ||||| || Sbjct 53522 GTCGACTCCTTTTGAATGTTGTAGTCAGACAGGGTACGGCCGTCTTCTAGCTGTTTGCCC 53463 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| |||||||| || || || ||||| ||||| ||||| || || || Sbjct 53462 GCAAAGATAAGACGCTGCTGATCAGGTGGAATCCCTTCCTTGTCCTGGATTTTCGCCTTC 53403 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||| | | ||||| |||| ||| | ||| ||||| |||||||| Sbjct 53402 ACGTTCTCAATCGTGTCACTCGGCTCGACCTCCAGGGTGATCGTCTTGCCCGTCAGAGTC 53343 Query 114366 TTTACAAAAATCTGCATG 114383 || || ||||| |||||| Sbjct 53342 TTCACGAAAATTTGCATG 53325 >seq9079 Length=83715 Score = 120 bits (132), Expect = 3e-22 Identities = 147/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| ||||||||||| || | ||||| || || || ||||| ||| Sbjct 3138 GTGGACTCTTTCTGAATGTTGTAGTCTGAGAGTGTACGGCCGTCCTCGAGCTGTTTGCCA 3197 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||||||||| ||||| || ||||| || || ||||| |||||| |||| Sbjct 3198 GCAAAGATGAGACGCTGCTGGTCTGGTGGAATTCCCTCCTTGTCTTGGATCTTTGCTTTT 3257 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| ||| ||| || |||| || | ||| ||||| |||| ||| Sbjct 3258 ACGTTCTCGATCGTGTCGCTGGGTTCAACTTCCAGCGTGATCGTCTTGCCAGTCAAAGTC 3317 Query 114366 TTTACAAAAATCTGCATGGCT 114386 || ||||| ||||||||| || Sbjct 3318 TTGACAAAGATCTGCATGCCT 3338 Score = 109 bits (120), Expect = 5e-19 Identities = 140/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 114191 TTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTA 114250 |||||| |||||||||||||| || ||||| || ||||| || || || ||| | Sbjct 3371 TTCTTTCTGAATGTTGTAATCAGACAGCGTACGGCCGTCCTCAAGCTGCTTGCCGGCGAA 3430 Query 114251 GATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTG 114310 ||| |||||||| ||||| |||||||| ||||| ||||| ||| || || | | Sbjct 3431 GATCAGACGCTGCTGGTCAGGAGGAATTCCTTCCTTGTCCTGAATTTTCGCCTTGACATT 3490 Query 114311 TTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 114370 ||||| |||||| | | || || || | || | ||||| || || || || || || Sbjct 3491 TTCAATGGTGTCACTCGGCTCAACTTCGAGCGTGATAGTTTTTCCCGTGAGTGTCTTCAC 3550 Query 114371 AAAAATCTGCATG 114383 ||||||||||||| Sbjct 3551 AAAAATCTGCATG 3563 Score = 102 bits (112), Expect = 7e-17 Identities = 163/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || ||||| || |||| || || || |||| || || ||||| ||||||||||| || Sbjct 2877 ATGCCGCCGCGAAGTCGCAGCACCAAGTGTAGGGTGGACTCTTTCTGAATGTTGTAGTCT 2936 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || || || || || || || || ||||||||||||| ||||| || Sbjct 2937 GAGAGTGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCAGGT 2996 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || || ||||| |||||| ||| | | || | ||||| ||| ||| Sbjct 2997 GGGATACCCTCCTTGTCTTGGATCTTTGCTTTGACGTTCTCGATCGTGTCACTGGGTTCA 3056 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 114386 || || | || | ||||||||| |||| ||| || || || ||||||||| || Sbjct 3057 ACTTCTAGCGTGATCGTTTTGCCAGTCAAAGTCTTGACGAAGATCTGCATGCCT 3110 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || |||||||||||||| || || || || ||||| || ||||| || Sbjct 2682 GTCGACTCCTTTTGAATGTTGTAGTCAGACAGGGTGCGGCCGTCTTCTAGCTGTTTGCCC 2741 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| ||||| || || || || || || ||||| ||||| || ||| || Sbjct 2742 GCAAAGATAAGACGTTGCTGATCAGGTGGGATCCCTTCCTTGTCCTGGATTTTTGCCTTG 2801 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | ||||| |||||| | | ||||| || | || | ||||| ||||| || || Sbjct 2802 ACATTTTCAATGGTGTCACTAGGCTCGACTTCGAGCGTGATGGTTTTACCGGTGAGTGTC 2861 Query 114366 TTTACAAAAATCTGCATG 114383 || ||||||||||||||| Sbjct 2862 TTGACAAAAATCTGCATG 2879 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || ||||| ||||| ||| | ||| || || || | || || || Sbjct 2454 GTCGATTCCTTCTGAATATTGTAGTCGGAGAGAGTGCGCCCGTCCTCCAACTGCTTGCCT 2513 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||||||||||||||||||||| |||||||| || ||||| || || || Sbjct 2514 GCAAAGATGAGACGCTGTTGGTCCGGTGGAATGCCCTCCTTGTCCTGGATTTTAGCCTTC 2573 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | ||| | ||||||| | | || || || | ||| | || |||||||| || || Sbjct 2574 ACATTTTCGATGGTGTCGCTAGGCTCAACCTCTAGGGTTATGGTCTTGCCGGTGAGGGTC 2633 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 2634 TTCACGAAGATCTGCAT 2650 >seq74841 Length=4471 Score = 102 bits (112), Expect = 7e-17 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || ||||||||||||||| | ||| || || || | || || || Sbjct 3185 GTCGATTCCTTCTGAATGTTGTAATCGGAGAGAGTGCGGCCGTCCTCCAACTGCTTGCCT 3126 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||||||||||||||| || |||||||| || ||||| || || || Sbjct 3125 GCAAAGATGAGACGCTGTTGGTCTGGTGGAATGCCCTCCTTGTCCTGGATTTTAGCCTTC 3066 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||||||| ||| ||||| |||| ||| | || |||||||| || || Sbjct 3065 ACATTTTTGATGGTGTCGCTGGGCTCGACCTCCAGGGTTATGGTCTTGCCGGTGAGGGTC 3006 Query 114366 TTTACAAAAATCTGCATGGCT 114386 || || || || |||||| || Sbjct 3005 TTAACGAAGATTTGCATGCCT 2985 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||| || |||||||||||||| || | || || ||||| || || || || Sbjct 2957 GTAGACTCCTTTTGAATGTTGTAGTCCGAGAGGGTGCGGCCGTCTTCGAGCTGCTTGCCG 2898 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTC 114289 ||| | || |||||||| |||||||||||||||||||||||||| Sbjct 2897 GCGAAAATAAGACGCTGCTGGTCCGGAGGAATGCCTTCTTTGTC 2854 >seq4323 Length=113087 Score = 102 bits (112), Expect = 7e-17 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || ||||||||||||||| | ||| || || || | || || || Sbjct 36926 GTCGATTCCTTCTGAATGTTGTAATCGGAGAGAGTGCGGCCGTCCTCCAACTGCTTGCCT 36985 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||||||||||||||| || |||||||| || ||||| || || || Sbjct 36986 GCAAAGATGAGACGCTGTTGGTCTGGTGGAATGCCCTCCTTGTCCTGGATTTTAGCCTTC 37045 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||||||| ||| ||||| |||| ||| | || |||||||| || || Sbjct 37046 ACATTTTTGATGGTGTCGCTGGGCTCGACCTCCAGGGTTATGGTCTTGCCGGTGAGGGTC 37105 Query 114366 TTTACAAAAATCTGCATGGCT 114386 || || || || |||||| || Sbjct 37106 TTAACGAAGATTTGCATGCCT 37126 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||| || |||||||||||||| || | || || ||||| || || || || Sbjct 37154 GTAGACTCCTTTTGAATGTTGTAGTCCGAGAGGGTGCGGCCGTCTTCGAGCTGCTTGCCG 37213 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTC 114289 ||| | || |||||||| |||||||||||||||||||||||||| Sbjct 37214 GCGAAAATAAGACGCTGCTGGTCCGGAGGAATGCCTTCTTTGTC 37257 >seq176411 Length=6678 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || ||||||||||||||| | ||| || || || | || || || Sbjct 4829 GTCGATTCCTTCTGAATGTTGTAATCGGCGAGAGTGCGGCCGTCCTCCAACTGCTTGCCT 4888 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||||||||||||||| || |||||||| || ||||| || || || Sbjct 4889 GCAAAGATGAGACGCTGTTGGTCTGGTGGAATGCCCTCCTTGTCCTGGATTTTAGCCTTC 4948 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||||||| ||| ||||| |||| ||| | || |||||||| || || Sbjct 4949 ACATTTTTGATGGTGTCGCTGGGCTCGACCTCCAGGGTTATGGTCTTGCCGGTGAGGGTC 5008 Query 114366 TTTACAAAAATCTGCAT 114382 || || || || ||||| Sbjct 5009 TTAACGAAGATTTGCAT 5025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419135494227408