Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq70405 100 5e-16 seq188574 96.9 7e-15 >seq70405 Length=8866 Score = 100 bits (110), Expect = 5e-16 Identities = 91/112 (81%), Gaps = 2/112 (2%) Strand=Plus/Minus Query 244706 ACCTCCTCCG-AGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGT 244764 ||||| |||| || || |||||| || | ||||||||| ||||| |||||||||||||| Sbjct 3234 ACCTCGTCCGGAGATG-TGTACTCCACGACCTCGGTGCACAGGTTGCTGCACTTGATGGT 3176 Query 244765 GCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATG 244816 ||| |||| | ||||| |||||| |||||||| |||||||| |||||| Sbjct 3175 GCCAAGGTTTTTCTGATTAGACTTGCGATTGCAGGCATCCTTGTACAGCATG 3124 >seq188574 Length=9004 Score = 96.9 bits (106), Expect = 7e-15 Identities = 104/135 (77%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 244706 ACCTCCTCCG-AGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGT 244764 ||||| |||| || || |||||| | | ||||||||| ||||| |||||||||||||| Sbjct 8555 ACCTCGTCCGGAGATG-TGTACTCCGCCACCTCGGTGCACAGGTTGCTGCACTTGATGGT 8613 Query 244765 GCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCC 244824 ||| |||| | ||||| |||||| |||||||| |||||||| |||||| | || Sbjct 8614 GCCAAGGTTTTTCTGATTAGACTTGCGATTGCAGGCATCCTTGTACAGCATGTATGGTGT 8673 Query 244825 CCCGGTCTCGAGCTG 244839 || ||||| | ||| Sbjct 8674 GCCCGTCTCAATCTG 8688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 942036381643840