Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_009603.1 Length=46365 Score E Sequences producing significant alignments: (Bits) Value seq121370 147 6e-31 >seq121370 Length=7911 Score = 147 bits (162), Expect = 6e-31 Identities = 239/343 (70%), Gaps = 6/343 (2%) Strand=Plus/Plus Query 42650 ACGCCCACCGCCAGGGCGTTGACCAGCGGATTGGCCTGATAGACGGCATCGAA---CACG 42706 |||||||||| || |||||||| || ||| | | |||| ||| | ||| ||| Sbjct 4568 ACGCCCACCGTCATCGCGTTGACGAGGATGTTGCCGTCATAGGCGGGGTGGAAATTCAC- 4626 Query 42707 GTCTCGCCGCCGATGTTCGGCAGACCGAGGCAGTTGCCGTAGAAGCTGATGCCGCTGGTG 42766 ||||||||| | | |||||| || | ||| ||||| ||| || ||||||| Sbjct 4627 --CTCGCCGCCTACGGTCGGCACGCCCACGCAATTGCCATAGCCGCCGATGCCGTGAACC 4684 Query 42767 ACGCCGTGCACGACCCGCGCCGTGTCGGGGTCGTCGGCCGCGCCGAAGCGCAGGGCGTCC 42826 |||||| | | | | | | ||| | |||| | |||||||||||| |||| | Sbjct 4685 ACGCCGGAAATCAGGTGGCGCATCTTGGGATGATCGGGCCGGCCGAAGCGCAGCGCGTTC 4744 Query 42827 ATGACCGCGACCGGGCGAGCGCCCATGGAGATGATGTCGCGGACGATGCCGCCCACACCC 42886 ||| || ||||| || |||||||| | || | |||||| | ||||||||| || || Sbjct 4745 ATGTTGGCCACCGGCCGCGCGCCCATTGTGAACACGTCGCGCAGGATGCCGCCGACGCCG 4804 Query 42887 GTCGCCGCGCCCTGGAAGGGCTCGATGAACGAGGGGTGGTTGTGACTCTCCGCCTTGAAC 42946 |||||||||||||| | ||||||||| | |||||||| || |||||| |||||| Sbjct 4805 GTCGCCGCGCCCTGATACGGCTCGATGTAGCTCGGGTGGTTATGGCTCTCCATCTTGAAG 4864 Query 42947 GTGACCGCCCATCCCTCGCCGACGTCGATGACGCCCGCGTTCT 42989 | | ||| || ||||||| ||||| || || || |||| Sbjct 4865 ATCGCGGCCTGCCCGTCGCCGATATCGATTACCCCGGCATTCT 4907 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147902969054216