Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq48326 154 3e-32 seq9079 150 4e-31 seq176411 131 4e-25 seq74841 127 5e-24 seq4323 127 5e-24 >seq48326 Length=57257 Score = 154 bits (170), Expect = 3e-32 Identities = 174/232 (75%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||||||||| | || |||||||||| ||| || || || || || |||| Sbjct 53328 CATG-CCACCGCGGAGCCGCAGGACGAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGT 53270 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | || ||||| |||||||| | || ||||| |||||||| |||||||| ||| Sbjct 53269 CAGATAGTGTGCGGCCGTCTTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCCG 53210 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 || || ||||| || |||||||| || || || || ||||| || | || || | | Sbjct 53209 GAGGAATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATTTTCAATGGTGTCACTGGGCT 53150 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | |||||||||||||| || || ||||| || |||||||| || |||||||| Sbjct 53149 CGACTTCGAGCGTGATGGTTTTACCGGTGAGTGTCTTGACAAAAATCTGCAT 53098 Score = 154 bits (170), Expect = 3e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| ||||| || | || || || |||| || || ||||| || || ||||| | Sbjct 53553 TCCTCCGCGCAGCCGGAGGACAAGGTGAAGGGTCGACTCCTTTTGAATGTTGTAGTCAGA 53494 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || || || |||||||||| ||||| || || ||||| |||||||| ||| | ||| Sbjct 53493 CAGGGTACGGCCGTCTTCTAGCTGTTTGCCCGCAAAGATAAGACGCTGCTGATCAGGTGG 53434 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 || ||||| || |||||||||||||| |||||||| || || | || |||| || || Sbjct 53433 AATCCCTTCCTTGTCCTGGATTTTCGCCTTCACGTTCTCAATCGTGTCACTCGGCTCGAC 53374 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||||||||| || ||||||||||| ||||| || ||||| Sbjct 53373 CTCCAGGGTGATCGTCTTGCCCGTCAGAGTCTTCACGAAAATTTGCAT 53326 Score = 136 bits (150), Expect = 9e-27 Identities = 146/193 (76%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || || ||||| ||||||| ||| || || || ||||| || || || ||||| || Sbjct 53745 TTCCTTCTGAATATTGTAGTCGGAGAGAGTACGCCCATCTTCCAACTGCTTGCCTGCAAA 53686 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||| ||||||||||| ||| || || || || ||||||||||| || ||||| || Sbjct 53685 GATGAGACGCTGTTGGTCCGGTGGAATGCCCTCCTTGTCCTGGATTTTAGCCTTCACATT 53626 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| || | ||||| | || || || || || || ||||| ||||| || ||||| || Sbjct 53625 TTCGATGGTGTCGCTAGGCTCAACCTCCAGGGTTATGGTCTTGCCGGTGAGGGTCTTCAC 53566 Query 288462 GAATATCTGCATT 288474 ||| ||||||||| Sbjct 53565 GAAGATCTGCATT 53553 Score = 132 bits (146), Expect = 1e-25 Identities = 172/236 (73%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || || || || | || || || |||| || |||||||| || || || || | Sbjct 52872 CATG-CCTCCACGAAGCCGTAGCACAAGGTGAAGGGTACTTTCTTTCTGAATGTTGTAAT 52814 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | ||||| || ||| || | || || || ||||||||||||||||| || | Sbjct 52813 CAGACAGCGTACG---GTCCTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAG 52757 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 || |||||||| || ||||| |||||||| || || ||||| |||| || || | | Sbjct 52756 GAGGAATTCCTTCCTTGTCCTGAATTTTCGCCTTGACATTTTCAATAGTGTCACTAGGCT 52697 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 | |||||||||||||| || || || || || ||||| || || |||||||| ||| Sbjct 52696 CAACTTCGAGCGTGATAGTTTTTCCCGTGAGTGTCTTCACAAAAATCTGCATGATG 52641 >seq9079 Length=83715 Score = 150 bits (166), Expect = 4e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| ||||| || | || || || |||| || || ||||| || || ||||| | Sbjct 2651 TCCTCCGCGCAGCCGGAGGACAAGGTGAAGGGTCGACTCCTTTTGAATGTTGTAGTCAGA 2710 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || ||||| |||||||||| ||||| || || ||||| ||||| || ||| | ||| Sbjct 2711 CAGGGTGCGGCCGTCTTCTAGCTGTTTGCCCGCAAAGATAAGACGTTGCTGATCAGGTGG 2770 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||| ||||| || ||||||||||| || || || ||||| || | || || | || || Sbjct 2771 GATCCCTTCCTTGTCCTGGATTTTTGCCTTGACATTTTCAATGGTGTCACTAGGCTCGAC 2830 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||||||||||| || || ||||| || |||||||| || |||||||| Sbjct 2831 TTCGAGCGTGATGGTTTTACCGGTGAGTGTCTTGACAAAAATCTGCAT 2878 Score = 147 bits (162), Expect = 5e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || |||||||| || | || || || || | || ||| || || ||||| |||||| Sbjct 2421 TGGCCACCGCGAAGCCGCAGGACAAGGTGGAGGGTCGATTCCTTCTGAATATTGTAGTCG 2480 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | ||| ||||| ||||| || || || || ||||| ||||| ||||||||||| | Sbjct 2481 GAGAGAGTGCGCCCGTCCTCCAACTGCTTGCCTGCAAAGATGAGACGCTGTTGGTCCGGT 2540 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || || ||||||||||| || ||||| ||||| || | ||||| | || Sbjct 2541 GGAATGCCCTCCTTGTCCTGGATTTTAGCCTTCACATTTTCGATGGTGTCGCTAGGCTCA 2600 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || || || || ||||| ||||| || ||||| ||||| ||||||||| Sbjct 2601 ACCTCTAGGGTTATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATT 2651 Score = 143 bits (158), Expect = 6e-29 Identities = 174/236 (74%), Gaps = 1/236 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || || || || | || || || |||| || |||||||| || || || || | Sbjct 3332 CATG-CCTCCACGAAGCCGTAGCACAAGGTGAAGGGTACTTTCTTTCTGAATGTTGTAAT 3390 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | ||||| || ||||| || | || || || ||||||||||||||||| || | Sbjct 3391 CAGACAGCGTACGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAG 3450 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 || |||||||| || ||||| |||||||| || || ||||| || | || |||| | Sbjct 3451 GAGGAATTCCTTCCTTGTCCTGAATTTTCGCCTTGACATTTTCAATGGTGTCACTCGGCT 3510 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 | |||||||||||||| || || || || || ||||| || || |||||||| ||| Sbjct 3511 CAACTTCGAGCGTGATAGTTTTTCCCGTGAGTGTCTTCACAAAAATCTGCATGATG 3566 Score = 140 bits (154), Expect = 8e-28 Identities = 171/232 (74%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || ||||| |||| || || | || | ||| ||||| || || || |||| Sbjct 2876 CATG-CCGCCGCGAAGTCGCAGCACCAAGTGTAGGGTGGACTCTTTCTGAATGTTGTAGT 2934 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | ||| ||||| ||||| || | || || || || ||||| |||||||| || | Sbjct 2935 CTGAGAGTGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCAG 2994 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 |||||| || || || || ||||| || ||||| ||||| || || | || || | || Sbjct 2995 GTGGGATACCCTCCTTGTCTTGGATCTTTGCTTTGACGTTCTCGATCGTGTCACTGGGTT 3054 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | ||||| ||||||||||| || || |||| |||||||||||| |||||||| Sbjct 3055 CAACTTCTAGCGTGATCGTTTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 3106 Score = 140 bits (154), Expect = 8e-28 Identities = 171/232 (74%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || || || || | || || || |||| ||| ||||| || || || |||| Sbjct 3104 CATG-CCTCCACGAAGCCGTAGCACAAGGTGAAGAGTGGACTCTTTCTGAATGTTGTAGT 3162 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | ||| || || ||||| || | ||||| || || ||||| |||||||| || Sbjct 3163 CTGAGAGTGTACGGCCGTCCTCGAGCTGTTTGCCAGCAAAGATGAGACGCTGCTGGTCTG 3222 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||| ||||| || || || ||||| || ||||| ||||| || || | ||||| | || Sbjct 3223 GTGGAATTCCCTCCTTGTCTTGGATCTTTGCTTTTACGTTCTCGATCGTGTCGCTGGGTT 3282 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | ||||| |||||||||||||| || |||| ||||||||| || |||||||| Sbjct 3283 CAACTTCCAGCGTGATCGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 3334 >seq176411 Length=6678 Score = 131 bits (144), Expect = 4e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || ||||| ||||| | || || || || | || ||| || || || || || ||| Sbjct 4796 TGGCCACCACGGAGCCGCAGGACAAGGTGGAGGGTCGATTCCTTCTGAATGTTGTAATCG 4855 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 ||||| ||||| ||||| || || || || ||||| ||||| ||||||||||| | Sbjct 4856 GCGAGAGTGCGGCCGTCCTCCAACTGCTTGCCTGCAAAGATGAGACGCTGTTGGTCTGGT 4915 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || || ||||||||||| || ||||| |||| || | ||||| | || Sbjct 4916 GGAATGCCCTCCTTGTCCTGGATTTTAGCCTTCACATTTTTGATGGTGTCGCTGGGCTCG 4975 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || ||||| ||||| || ||||| ||||| || ||||| Sbjct 4976 ACCTCCAGGGTTATGGTCTTGCCGGTGAGGGTCTTAACGAAGATTTGCAT 5025 >seq74841 Length=4471 Score = 127 bits (140), Expect = 5e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || ||||| ||||| | || || || || | || ||| || || || || || ||| Sbjct 3218 TGGCCACCACGGAGCCGCAGGACAAGGTGGAGGGTCGATTCCTTCTGAATGTTGTAATCG 3159 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | ||| ||||| ||||| || || || || ||||| ||||| ||||||||||| | Sbjct 3158 GAGAGAGTGCGGCCGTCCTCCAACTGCTTGCCTGCAAAGATGAGACGCTGTTGGTCTGGT 3099 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || || ||||||||||| || ||||| |||| || | ||||| | || Sbjct 3098 GGAATGCCCTCCTTGTCCTGGATTTTAGCCTTCACATTTTTGATGGTGTCGCTGGGCTCG 3039 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || ||||| ||||| || ||||| ||||| || ||||| Sbjct 3038 ACCTCCAGGGTTATGGTCTTGCCGGTGAGGGTCTTAACGAAGATTTGCAT 2989 >seq4323 Length=113087 Score = 127 bits (140), Expect = 5e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || ||||| ||||| | || || || || | || ||| || || || || || ||| Sbjct 36893 TGGCCACCACGGAGCCGGAGGACAAGGTGGAGGGTCGATTCCTTCTGAATGTTGTAATCG 36952 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | ||| ||||| ||||| || || || || ||||| ||||| ||||||||||| | Sbjct 36953 GAGAGAGTGCGGCCGTCCTCCAACTGCTTGCCTGCAAAGATGAGACGCTGTTGGTCTGGT 37012 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || || ||||||||||| || ||||| |||| || | ||||| | || Sbjct 37013 GGAATGCCCTCCTTGTCCTGGATTTTAGCCTTCACATTTTTGATGGTGTCGCTGGGCTCG 37072 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || ||||| ||||| || ||||| ||||| || ||||| Sbjct 37073 ACCTCCAGGGTTATGGTCTTGCCGGTGAGGGTCTTAACGAAGATTTGCAT 37122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1176705837606952