Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq139282 102 1e-16 seq17548 87.8 2e-12 >seq139282 Length=14605 Score = 102 bits (112), Expect = 1e-16 Identities = 250/373 (67%), Gaps = 16/373 (4%) Strand=Plus/Minus Query 10787 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 10846 || ||||| || ||||| || | | ||| ||||| | |||| || || || || Sbjct 10718 CGGTCAAAACGTCCTGGCCGTAATAAAGCGGGATCAAGTACATCAGGTCGATTAGTGGCG 10659 Query 10847 GCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTG 10906 || ||||||| || ||| | | ||||| |||||||| || ||||||||||| Sbjct 10658 GCCATGACAATAATACCCTCTTTGCCTTCAAAACCATCCATTTCCACTAAGAGTTGATTA 10599 Query 10907 ATGGTTTGTTCGCGTTCATCATTCGCGGGCA-TACC---ACCCGCACTGCGTTGCTTACC 10962 | |||||| || |||||| ||| | || ||| ||| |||| || || || Sbjct 10598 AGGGTTTGCTCTCGTTCA----TCGTGACCACCACCTAAACCAGCACCACGGTGACGCCC 10543 Query 10963 GACGGCGTCAATTTCATCGATGAAAACGATACA---CGGTTGATTTTCACGGGCAACTTC 11019 ||||| || |||||||| || |||| ||||| || ||| || | | || || Sbjct 10542 TACGGCATCGATTTCATCAATAAAAATAATACAAGGCGCTTGCTTCTTA---GCTTGATC 10486 Query 11020 AAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGGCGGC 11079 ||| || || || || | |||||| ||||| ||||||||||| ||||||| || | Sbjct 10485 AAACATGTCACGAACGCGGGAGGCACCTACACCAACAAACATTTCAACAAAATCGGAACC 10426 Query 11080 GGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCT 11138 ||| || | | ||| || || |||| |||||| || | ||| || || ||||| | Sbjct 10425 CGAA-ATAGTAAAGAACGGTACTTTGGCTTCACCAGCTACCGCTTTAGCTAGAAGGGTTT 10367 Query 11139 TCCCCGTCCCAGG 11151 | || || || || Sbjct 10366 TACCGGTTCCCGG 10354 >seq17548 Length=139630 Score = 87.8 bits (96), Expect = 2e-12 Identities = 117/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 114761 GGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATC 114820 || || | ||| ||||| |||| | ||||| || ||||||||||| |||||||||||| Sbjct 1887 GGACACATGAGCGACCAGACACCATCTTCCTCCACGCGCTTCATGAACAGGTCTGGGATC 1946 Query 114821 CAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAAC 114880 |||||||| | || | |||||| |||| ||| || | ||| || || | Sbjct 1947 CAGAGAGCATAAAACAAGTCCCGAGCTCGAGTTTCCTCTTTGCCCGTGTTCTTCTTCAGC 2006 Query 114881 TCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACA 114923 || | || || | ||| || |||||||| || |||||||||| Sbjct 2007 TCAAGGAACTCGAAGATGTCTGCGTGCCAGGGCTCCAGGTACA 2049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595896923378720