Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_011056.1 Length=75811 Score E Sequences producing significant alignments: (Bits) Value seq122023 205 4e-48 seq121528 102 4e-17 >seq122023 Length=4177 Score = 205 bits (226), Expect = 4e-48 Identities = 469/703 (67%), Gaps = 5/703 (1%) Strand=Plus/Minus Query 65904 GTGGACACCATTCCCACCGGCTCGATAGCTCTGGACGCCGCTCTCGGCATCGGGGGGTAT 65963 ||||| ||| || |||||||| | | |||| ||| || ||| |||| || Sbjct 3481 GTGGAAACCGTTTCCACCGGCAGTCTCGGGTTGGATATCGCGCTTGGCGTCGGCGGCCTG 3422 Query 65964 CCGAGGGGCCGGGTAGTGGAGATCTACGGTCCTGAGTCTTCAGGGAAGTCAACGTTGTGC 66023 ||| | || ||| | || ||||| ||||| || || || || ||| | ||| | Sbjct 3421 CCGCGCGGGCGGATCGTCGAGATTTACGGGCCGGAAAGCTCGGGCAAGACCACGCTCGCG 3362 Query 66024 CTCCACGCGGTGGCCAATGCCCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCCGAA 66083 ||||| || | || | || |||||| || || | || || | | |||| |||||| Sbjct 3361 CTCCATGCCATCGCGGAGGCGCAGAAGCTTGGCGGGACGGCGGCGTTCGTCGATGCCGAA 3302 Query 66084 CATTCTCTCGACCCTGAGTACGCCGCGGCGCTCGGGGTGGATGTCGACAATCTCGTGGTT 66143 ||| | ||||| || | || ||| | |||||| || || || || | | | | Sbjct 3301 CATGCGCTCGATCCGGTCTATGCCAAGAAGCTCGGCGTCGACATCAACGAGATGATCATC 3242 Query 66144 GTGCAGCCAGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAGTCTGGC 66203 |||||| || || || |||||||| ||||||||||| || | | || || | Sbjct 3241 TCGCAGCCCGATACCGGTGAGCAGGCGCTGGAGATCGTCGATACTTTGGTGCGCTCGAAC 3182 Query 66204 GAGGTTTCCATCATCGTTGTGGACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAGCTCGAA 66263 | | | | | | || | || || || || || || |||||||| || ||| |||| Sbjct 3181 GCGATCGACGTGCTGGTGATCGATTCGGTCGCCGCGCTCGTGCCGCGCGCCGAGATCGAG 3122 Query 66264 GGGGACATCGGGGACTCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCATGCGC 66323 || || || || ||| || |||||||| || || ||||||||| ||||| ||||| Sbjct 3121 GGCGAGATGGGCGACAGCCATGTCGGCCTCCAGGCGCGCCTGATGAGCCAGGCGCTGCGC 3062 Query 66324 AAGCTGACCGGCACGATTGCCAGCACCAACACGCTCACCCTGTGGGTGAATCAGCTGCGC 66383 ||||||||||||||||| | || | | ||| | | | | || ||| | ||| Sbjct 3061 AAGCTGACCGGCACGATCAGCCGCTCGCGCTGCCTCGTCATCTTCATCAACCAGATCCGC 3002 Query 66384 GAGAAGATCGGCAACGTGGGCTACGGCCCGAATGAGACCACCACCGGTGGTAAGGCTCTG 66443 |||||||||| ||| |||||| || || || || ||||| || || || ||| Sbjct 3001 ATGAAGATCGGC---GTGATGTACGGCTCGCCCGAAACGACGACCGGCGGCAATGCGCTG 2945 Query 66444 CGCTTCTACGCCTCGGTGCGTATGGATGTCCGCAGGATCGCCACCGAGAAGGAAGGCGAT 66503 |||||||||||||| || | ||| | ||| | | || | | ||||| | || Sbjct 2944 AAATTCTACGCCTCGGTCCGGCTCGATATTCGCCGCACCGGCTCGATCAAGGATCGTGAC 2885 Query 66504 GAGGCTGTCGGCAAC-CGCACGCGCGTGAAGGTTGTCAAGAACAAGCTGGCGCCTCCGCA 66562 ||||| |||||||| || | ||||| ||||| |||||||||||| | || || ||| Sbjct 2884 GAGGCGATCGGCAACACGGTC-CGCGTCAAGGTGGTCAAGAACAAGGTCGCCCCGCCGTT 2826 Query 66563 CCGCCAGGCTGAGTTTTCCATCGTCTACGGCGAGGGCATTTCC 66605 | |||| ||||| |||| | | |||||||||||||||| Sbjct 2825 CAAGCAGGTCGAGTTCGACATCATGTTCGGCGAGGGCATTTCC 2783 >seq121528 Length=3295 Score = 102 bits (112), Expect = 4e-17 Identities = 157/221 (71%), Gaps = 5/221 (2%) Strand=Plus/Plus Query 66386 GAAGATCGGCAACGTGGGCTACGGCCCGAATGAGACCACCACCGGTGGTAAGGCTCTGCG 66445 |||||||||| ||| |||||| || || || || ||||| || || || ||| Sbjct 6 GAAGATCGGC---GTGATGTACGGCTCGCCCGAAACGACGACCGGCGGCAATGCGCTGAA 62 Query 66446 CTTCTACGCCTCGGTGCGTATGGATGTCCGCAGGATCGCCACCGAGAAGGAAGGCGATGA 66505 |||||||||||||| || | ||| | ||| | | || | | ||||| | || || Sbjct 63 ATTCTACGCCTCGGTCCGGCTCGATATTCGCCGCACCGGCTCGATCAAGGATCGTGACGA 122 Query 66506 GGCTGTCGGCAAC-CGCACGCGCGTGAAGGTTGTCAAGAACAAGCTGGCGCCTCCGCACC 66564 ||| |||||||| || | ||||| ||||| |||||||||||| | || || ||| | Sbjct 123 GGCGATCGGCAACACGGTC-CGCGTCAAGGTGGTCAAGAACAAGGTCGCCCCGCCGTTCA 181 Query 66565 GCCAGGCTGAGTTTTCCATCGTCTACGGCGAGGGCATTTCC 66605 |||| ||||| |||| | | |||||||||||||||| Sbjct 182 AGCAGGTCGAGTTCGACATCATGTTCGGCGAGGGCATTTCC 222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 241893905710928