Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq48326 123 2e-23 seq9079 120 3e-22 seq70405 86.0 6e-12 seq74841 84.2 2e-11 seq4323 84.2 2e-11 >seq48326 Length=57257 Score = 123 bits (136), Expect = 2e-23 Identities = 167/231 (72%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | |||| || | ||| | | | |||||||| |||||||||||||| Sbjct 53325 GCCACCGCGGAGCCGCAGGACGAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAG- 53267 Query 138447 CATAGTACGCGA--GTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGA 138504 ||||| ||| ||| ||||| || || |||| |||| |||||||| || |||||| Sbjct 53266 -ATAGTGTGCGGCCGTCTTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCCGGA 53208 Query 138505 GGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCC 138564 || || ||||| ||||| ||| ||| || | | ||| | |||||| | | ||| Sbjct 53207 GGAATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATTTTCAATGGTGTCACTGGGCTCG 53148 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || |||| ||| | |||||||| || || || || ||||||||||||||| Sbjct 53147 ACTTCGAGCGTGATGGTTTTACCGGTGAGTGTCTTGACAAAAATCTGCATG 53097 Score = 109 bits (120), Expect = 5e-19 Identities = 141/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||||||||||||||| || ||||| ||| || || ||||| || | | Sbjct 53519 GACTCCTTTTGAATGTTGTAGTCAGACAGGGTACGGCCGTCTTCTAGCTGTTTGCCCGCA 53460 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| || || || || || ||||| ||||| |||||| || | Sbjct 53459 AAGATAAGACGCTGCTGATCAGGTGGAATCCCTTCCTTGTCCTGGATTTTCGCCTTCACG 53400 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||| ||| ||| ||||| | || | ||| || || |||||||| || Sbjct 53399 TTCTCAATCGTGTCACTCGGCTCGACCTCCAGGGTGATCGTCTTGCCCGTCAGAGTCTTC 53340 Query 138601 ACAAAAATCTGCATG 138615 || ||||| |||||| Sbjct 53339 ACGAAAATTTGCATG 53325 Score = 107 bits (118), Expect = 2e-18 Identities = 163/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 |||||| || | |||| || || || | | | ||||| || || ||||||||||| Sbjct 53097 GCCGCCACGAAGTCGCAGCACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCCGA 53038 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || || ||||||||| || || |||| | |||| |||||||| ||||| || || Sbjct 53037 AAGTGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGTGG 52978 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| ||| ||||| | || | |||||| | | || || Sbjct 52977 AATTCCCTCCTTGTCTTGGATCTTTGCTTTTACGTTCTCGATCGTGTCGCTGGGTTCAAC 52918 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 || | ||| | || || ||||||| ||| || ||||| ||||||||| || Sbjct 52917 TTCCAGCGTGATTGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCATGCCT 52866 Score = 100 bits (110), Expect = 3e-16 Identities = 140/193 (73%), Gaps = 5/193 (3%) Strand=Plus/Minus Query 138424 TCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAG 138483 || || ||||||||||| || || ||||| |||||| || || || |||| || Sbjct 52832 TCTTTCTGAATGTTGTAATCAGACAGCGTACG---GTCCTCAAGCTGCTTGCCGGCGAAG 52776 Query 138484 ATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT-TG 138542 || |||||||| ||||| ||||| || ||||| ||||| ||| |||| | || | | Sbjct 52775 ATCAGACGCTGCTGGTCAGGAGGAATTCCTTCCTTGTCC-TGAATTTTCGCCTTGACATT 52717 Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 ||| | ||||| | | ||| || |||| ||| | ||||| || || || || || || Sbjct 52716 TTCAATAGTGTCACTAGGCTCAACTTCGAGCGTGATAGTTTTTCCCGTGAGTGTCTTCAC 52657 Query 138603 AAAAATCTGCATG 138615 ||||||||||||| Sbjct 52656 AAAAATCTGCATG 52644 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 |||||| || | |||| || | || | | | || ||||| ||||| ||||||||| Sbjct 53781 GCCGCCACGAAGCCGCAGGACAAGGTGGAGGGTCGATTCCTTCTGAATATTGTAGTCGGA 53722 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||||||| || || | || || || | | |||| ||||||||||||||||| || Sbjct 53721 GAGAGTACGCCCATCTTCCAACTGCTTGCCTGCAAAGATGAGACGCTGTTGGTCCGGTGG 53662 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| |||||| || | | ||| | ||||||| | | ||| || Sbjct 53661 AATGCCCTCCTTGTCCTGGATTTTAGCCTTCACATTTTCGATGGTGTCGCTAGGCTCAAC 53602 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || || || || || || || || || |||||||| Sbjct 53601 CTCCAGGGTTATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 53554 >seq9079 Length=83715 Score = 120 bits (132), Expect = 3e-22 Identities = 168/234 (72%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 |||||| || | |||| || || |||| | | ||||| || ||||||||||||| || Sbjct 2879 GCCGCCGCGAAGTCGCAGCACCAAGTGTAGGGTGGACTCTTTCTGAATGTTGTAGT--CT 2936 Query 138447 CATAGTACGCG--AGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGA 138504 | ||| ||| ||||||||| || || |||| | |||| |||||||| ||||| || Sbjct 2937 GAGAGTGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCAGGT 2996 Query 138505 GGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCC 138564 || ||||| || ||||| ||| ||| ||| | | || | ||||| | | || Sbjct 2997 GGGATACCCTCCTTGTCTTGGATCTTTGCTTTGACGTTCTCGATCGTGTCACTGGGTTCA 3056 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 || || | ||| | |||||| ||||||| ||| || || || ||||||||| || Sbjct 3057 ACTTCTAGCGTGATCGTTTTGCCAGTCAAAGTCTTGACGAAGATCTGCATGCCT 3110 Score = 118 bits (130), Expect = 1e-21 Identities = 143/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||||||||||||||| || || || ||| || || ||||| || | | Sbjct 2685 GACTCCTTTTGAATGTTGTAGTCAGACAGGGTGCGGCCGTCTTCTAGCTGTTTGCCCGCA 2744 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| ||||| || || || || || || ||||| ||||| ||||||| || | Sbjct 2745 AAGATAAGACGTTGCTGATCAGGTGGGATCCCTTCCTTGTCCTGGATTTTTGCCTTGACA 2804 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | ||| | |||||| | | ||| || |||| ||| | |||||||| || || || || Sbjct 2805 TTTTCAATGGTGTCACTAGGCTCGACTTCGAGCGTGATGGTTTTACCGGTGAGTGTCTTG 2864 Query 138601 ACAAAAATCTGCATG 138615 ||||||||||||||| Sbjct 2865 ACAAAAATCTGCATG 2879 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||| || |||||||||||||| | ||||| ||||||||| ||||| || | | Sbjct 3141 GACTCTTTCTGAATGTTGTAGTCTGAGAGTGTACGGCCGTCCTCGAGCTGTTTGCCAGCA 3200 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| ||||| || || || || || ||||| ||| ||| ||||| Sbjct 3201 AAGATGAGACGCTGCTGGTCTGGTGGAATTCCCTCCTTGTCTTGGATCTTTGCTTTTACG 3260 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | | || || || | ||| | ||| || ||||||| ||| || Sbjct 3261 TTCTCGATCGTGTCGCTGGGTTCAACTTCCAGCGTGATCGTCTTGCCAGTCAAAGTCTTG 3320 Query 138601 ACAAAAATCTGCATGGCT 138618 ||||| ||||||||| || Sbjct 3321 ACAAAGATCTGCATGCCT 3338 Score = 111 bits (122), Expect = 2e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 138424 TCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAG 138483 || || ||||||||||| || || ||||| |||||| || || || |||| || Sbjct 3372 TCTTTCTGAATGTTGTAATCAGACAGCGTACGGCCGTCCTCAAGCTGCTTGCCGGCGAAG 3431 Query 138484 ATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTG 138542 || |||||||| ||||| ||||| || ||||| ||||| ||| |||| | || | | Sbjct 3432 ATCAGACGCTGCTGGTCAGGAGGAATTCCTTCCTTGTC-CTGAATTTTCGCCTTGACATT 3490 Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 ||| | |||||| ||| ||| || |||| ||| | ||||| || || || || || || Sbjct 3491 TTCAATGGTGTCACTCGGCTCAACTTCGAGCGTGATAGTTTTTCCCGTGAGTGTCTTCAC 3550 Query 138603 AAAAATCTGCATG 138615 ||||||||||||| Sbjct 3551 AAAAATCTGCATG 3563 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| ||||| ||||||||| | ||| ||| |||||| | || || || | | Sbjct 2457 GATTCCTTCTGAATATTGTAGTCGGAGAGAGTGCGCCCGTCCTCCAACTGCTTGCCTGCA 2516 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| ||||||||||||||||| || || || || ||||| |||||| || | Sbjct 2517 AAGATGAGACGCTGTTGGTCCGGTGGAATGCCCTCCTTGTCCTGGATTTTAGCCTTCACA 2576 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | ||| | ||||||| | | ||| ||||| | || | || || || || || || || Sbjct 2577 TTTTCGATGGTGTCGCTAGGCTCAACCTCTAGGGTTATGGTCTTGCCGGTGAGGGTCTTC 2636 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 2637 ACGAAGATCTGCAT 2650 >seq70405 Length=8866 Score = 86.0 bits (94), Expect = 6e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 153640 TGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGAT 153699 |||||| ||||| ||||| ||| ||||||||||| || ||| ||| | |||| ||||| Sbjct 3218 TGTACTCCACGACCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCAAGGTTTTTCTGAT 3159 Query 153700 TGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTC 153751 | ||||||||||| || || ||| | |||||||| ||| ||| || || Sbjct 3158 TAGACTTGCGATTGCAGGCATCCTTGTACAGCATGTATGGTGTGCCCGTTTC 3107 >seq74841 Length=4471 Score = 84.2 bits (92), Expect = 2e-11 Identities = 86/111 (77%), Gaps = 1/111 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||||||||||||||| | || || ||| ||||| || || |||| Sbjct 2954 GACTCCTTTTGAATGTTGTAGTCCGAGAGGGTGCGGCCGTCTTCGAGCTGCTTGCCGGCG 2895 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTT 138531 | || |||||||| ||||||||||| || ||||||||||| ||| |||| Sbjct 2894 AAAATAAGACGCTGCTGGTCCGGAGGAATGCCTTCTTTGTC-CTGAATTTT 2845 Score = 82.4 bits (90), Expect = 8e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| ||||||||||| ||| | ||| || |||||| | || || || | | Sbjct 3182 GATTCCTTCTGAATGTTGTAATCGGAGAGAGTGCGGCCGTCCTCCAACTGCTTGCCTGCA 3123 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||||||||| || || || || || ||||| |||||| || | Sbjct 3122 AAGATGAGACGCTGTTGGTCTGGTGGAATGCCCTCCTTGTCCTGGATTTTAGCCTTCACA 3063 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||||| | | ||| ||||| | || | || || || || || || || Sbjct 3062 TTTTTGATGGTGTCGCTGGGCTCGACCTCCAGGGTTATGGTCTTGCCGGTGAGGGTCTTA 3003 Query 138601 ACAAAAATCTGCATGGCT 138618 || || || |||||| || Sbjct 3002 ACGAAGATTTGCATGCCT 2985 >seq4323 Length=113087 Score = 84.2 bits (92), Expect = 2e-11 Identities = 86/111 (77%), Gaps = 1/111 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||||||||||||||| | || || ||| ||||| || || |||| Sbjct 37157 GACTCCTTTTGAATGTTGTAGTCCGAGAGGGTGCGGCCGTCTTCGAGCTGCTTGCCGGCG 37216 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTT 138531 | || |||||||| ||||||||||| || ||||||||||| ||| |||| Sbjct 37217 AAAATAAGACGCTGCTGGTCCGGAGGAATGCCTTCTTTGTC-CTGAATTTT 37266 Score = 82.4 bits (90), Expect = 8e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| ||||||||||| ||| | ||| || |||||| | || || || | | Sbjct 36929 GATTCCTTCTGAATGTTGTAATCGGAGAGAGTGCGGCCGTCCTCCAACTGCTTGCCTGCA 36988 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||||||||| || || || || || ||||| |||||| || | Sbjct 36989 AAGATGAGACGCTGTTGGTCTGGTGGAATGCCCTCCTTGTCCTGGATTTTAGCCTTCACA 37048 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||||| | | ||| ||||| | || | || || || || || || || Sbjct 37049 TTTTTGATGGTGTCGCTGGGCTCGACCTCCAGGGTTATGGTCTTGCCGGTGAGGGTCTTA 37108 Query 138601 ACAAAAATCTGCATGGCT 138618 || || || |||||| || Sbjct 37109 ACGAAGATTTGCATGCCT 37126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495052239324480