Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq9079 100 2e-16 seq48326 98.7 7e-16 seq176411 96.9 2e-15 seq74841 96.9 2e-15 seq4323 96.9 2e-15 >seq9079 Length=83715 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || ||||| || || || || || ||||| ||| |||| | | | |||| || || || Sbjct 2448 TGGAGGGTCGATTCCTTCTGAATATTGTAGTCGGAGAGAGTGCGCCCGTCCTCCAACTGC 2507 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 ||||| || | || | |||||||||||| |||||| || |||||||| ||||| Sbjct 2508 TTGCCTGCAAAGATGAGACGCTGTTGGTCCGGTGGAATGCCCTCCTTGTCCTGGATTTTA 2567 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || ||| |||| || || |||||| || || |||| ||| ||||| || || || Sbjct 2568 GCCTTCACATTTTCGATGGTGTCGCTAGGCTCAACCTCTAGGGTTATGGTCTTGCCGGTG 2627 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 || || || || || || ||||| Sbjct 2628 AGGGTCTTCACGAAGATCTGCAT 2650 Score = 98.7 bits (108), Expect = 7e-16 Identities = 148/206 (72%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCTTCTAATT 15031 ||||| || || ||||| || |||||||| || ||||| | || |||| || | | Sbjct 3132 TGAAGAGTGGACTCTTTCTGAATGTTGTAGTC--TGAGAGTGTACGGCCGTCCTCGAGCT 3189 Query 15032 GTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAAT-T 15090 |||||||||| | || | |||||| ||||| ||||||||| |||||||| || | Sbjct 3190 GTTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGTGGAATTCCCTCCTTGTCTTGGATCT 3249 Query 15091 TTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCT 15150 |||| |||||| | || || || ||||| ||| || || | || || || || || Sbjct 3250 TTGC-TTTTACGTTCTCGATCGTGTCGCTGGGTTCAACTTCCAGCGTGATCGTCTTGCCA 3308 Query 15151 GTCAGAGTTTTTACAAAAATTTGCAT 15176 |||| ||| || ||||| || ||||| Sbjct 3309 GTCAAAGTCTTGACAAAGATCTGCAT 3334 Score = 96.9 bits (106), Expect = 2e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 |||||||| || || ||||| |||||||| || || | | ||||||||| ||| Sbjct 2676 TGAAGGGTCGACTCCTTTTGAATGTTGTAGTCAGACAGGGTGCGGCCGTCTTCTAGCTGT 2735 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 ||||| || | || | ||| || || || ||| || ||||||||||| ||||| Sbjct 2736 TTGCCCGCAAAGATAAGACGTTGCTGATCAGGTGGGATCCCTTCCTTGTCCTGGATTTTT 2795 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || ||| |||| || || || ||| || || || | || ||||||||||| || Sbjct 2796 GCCTTGACATTTTCAATGGTGTCACTAGGCTCGACTTCGAGCGTGATGGTTTTACCGGTG 2855 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 || || || |||||||| ||||| Sbjct 2856 AGTGTCTTGACAAAAATCTGCAT 2878 Score = 96.9 bits (106), Expect = 2e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 ||||||||| ||||| || ||||||||||| || | | |||| || | || Sbjct 3360 TGAAGGGTACTTTCTTTCTGAATGTTGTAATCAGACAGCGTACGGCCGTCCTCAAGCTGC 3419 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 ||||| ||| | |||| |||||| ||||| ||||||||||||||||| |||||| Sbjct 3420 TTGCCGGCGAAGATCAGACGCTGCTGGTCAGGAGGAATTCCTTCCTTGTCCTGAATTTTC 3479 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || ||| |||| || || || || || || || | || || ||||| || || Sbjct 3480 GCCTTGACATTTTCAATGGTGTCACTCGGCTCAACTTCGAGCGTGATAGTTTTTCCCGTG 3539 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 || || || |||||||| ||||| Sbjct 3540 AGTGTCTTCACAAAAATCTGCAT 3562 >seq48326 Length=57257 Score = 98.7 bits (108), Expect = 7e-16 Identities = 144/203 (71%), Gaps = 3/203 (1%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 ||||||||| ||||| || ||||||||||| || | | ||| || | || Sbjct 52844 TGAAGGGTACTTTCTTTCTGAATGTTGTAATCAGACAGCGTACG---GTCCTCAAGCTGC 52788 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 ||||| ||| | |||| |||||| ||||| ||||||||||||||||| |||||| Sbjct 52787 TTGCCGGCGAAGATCAGACGCTGCTGGTCAGGAGGAATTCCTTCCTTGTCCTGAATTTTC 52728 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || ||| |||| ||||| || ||| || || || | || || ||||| || || Sbjct 52727 GCCTTGACATTTTCAATAGTGTCACTAGGCTCAACTTCGAGCGTGATAGTTTTTCCCGTG 52668 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 || || || |||||||| ||||| Sbjct 52667 AGTGTCTTCACAAAAATCTGCAT 52645 Score = 96.9 bits (106), Expect = 2e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || ||||| || || || || || ||||| ||| |||| | | | | ||||| || || Sbjct 53756 TGGAGGGTCGATTCCTTCTGAATATTGTAGTCGGAGAGAGTACGCCCATCTTCCAACTGC 53697 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 ||||| || | || | |||||||||||| |||||| || |||||||| ||||| Sbjct 53696 TTGCCTGCAAAGATGAGACGCTGTTGGTCCGGTGGAATGCCCTCCTTGTCCTGGATTTTA 53637 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || ||| |||| || || |||||| || || || | ||| ||||| || || || Sbjct 53636 GCCTTCACATTTTCGATGGTGTCGCTAGGCTCAACCTCCAGGGTTATGGTCTTGCCGGTG 53577 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 || || || || || || ||||| Sbjct 53576 AGGGTCTTCACGAAGATCTGCAT 53554 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 |||||||| || || ||||| |||||||| || || | | ||||||||| ||| Sbjct 53528 TGAAGGGTCGACTCCTTTTGAATGTTGTAGTCAGACAGGGTACGGCCGTCTTCTAGCTGT 53469 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 ||||| || | || | |||||| || || |||||| ||||||||||| ||||| Sbjct 53468 TTGCCCGCAAAGATAAGACGCTGCTGATCAGGTGGAATCCCTTCCTTGTCCTGGATTTTC 53409 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || || | || || || || || || || || | ||| || || || || ||| Sbjct 53408 GCCTTCACGTTCTCAATCGTGTCACTCGGCTCGACCTCCAGGGTGATCGTCTTGCCCGTC 53349 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 ||||| || || ||||||||||| Sbjct 53348 AGAGTCTTCACGAAAATTTGCAT 53326 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||||||||| || || || || |||||||| || || | | ||||||| | || Sbjct 53301 ATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGATAGTGTGCGGCCGTCTTCGAGCTG 53242 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAAT-TT 15091 || || ||| | || | |||||| || || ||||| ||||||||||| || || Sbjct 53241 CTTTCCGGCGAAGATGAGACGCTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGGATCTT 53182 Query 15092 TGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTG 15151 ||| || ||| |||| || || || || || || || | || ||||||||||| | Sbjct 53181 TGCCTTG-ACATTTTCAATGGTGTCACTGGGCTCGACTTCGAGCGTGATGGTTTTACCGG 53123 Query 15152 TCAGAGTTTTTACAAAAATTTGCAT 15176 | || || || |||||||| ||||| Sbjct 53122 TGAGTGTCTTGACAAAAATCTGCAT 53098 >seq176411 Length=6678 Score = 96.9 bits (106), Expect = 2e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || ||||| || || || || |||||||||||| |||| | | |||| || || || Sbjct 4823 TGGAGGGTCGATTCCTTCTGAATGTTGTAATCGGCGAGAGTGCGGCCGTCCTCCAACTGC 4882 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 ||||| || | || | |||||||||||| |||||| || |||||||| ||||| Sbjct 4883 TTGCCTGCAAAGATGAGACGCTGTTGGTCTGGTGGAATGCCCTCCTTGTCCTGGATTTTA 4942 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || ||| ||| || || ||||| || || || | ||| ||||| || || || Sbjct 4943 GCCTTCACATTTTTGATGGTGTCGCTGGGCTCGACCTCCAGGGTTATGGTCTTGCCGGTG 5002 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 || || || || || |||||||| Sbjct 5003 AGGGTCTTAACGAAGATTTGCAT 5025 >seq74841 Length=4471 Score = 96.9 bits (106), Expect = 2e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || ||||| || || || || |||||||||||| |||| | | |||| || || || Sbjct 3191 TGGAGGGTCGATTCCTTCTGAATGTTGTAATCGGAGAGAGTGCGGCCGTCCTCCAACTGC 3132 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 ||||| || | || | |||||||||||| |||||| || |||||||| ||||| Sbjct 3131 TTGCCTGCAAAGATGAGACGCTGTTGGTCTGGTGGAATGCCCTCCTTGTCCTGGATTTTA 3072 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || ||| ||| || || ||||| || || || | ||| ||||| || || || Sbjct 3071 GCCTTCACATTTTTGATGGTGTCGCTGGGCTCGACCTCCAGGGTTATGGTCTTGCCGGTG 3012 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 || || || || || |||||||| Sbjct 3011 AGGGTCTTAACGAAGATTTGCAT 2989 >seq4323 Length=113087 Score = 96.9 bits (106), Expect = 2e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || ||||| || || || || |||||||||||| |||| | | |||| || || || Sbjct 36920 TGGAGGGTCGATTCCTTCTGAATGTTGTAATCGGAGAGAGTGCGGCCGTCCTCCAACTGC 36979 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 ||||| || | || | |||||||||||| |||||| || |||||||| ||||| Sbjct 36980 TTGCCTGCAAAGATGAGACGCTGTTGGTCTGGTGGAATGCCCTCCTTGTCCTGGATTTTA 37039 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || ||| ||| || || ||||| || || || | ||| ||||| || || || Sbjct 37040 GCCTTCACATTTTTGATGGTGTCGCTGGGCTCGACCTCCAGGGTTATGGTCTTGCCGGTG 37099 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 || || || || || |||||||| Sbjct 37100 AGGGTCTTAACGAAGATTTGCAT 37122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356542269694940